View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_15 (Length: 316)
Name: NF1257_low_15
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 9163177 - 9163466
Alignment:
| Q |
12 |
aaaggccggacggatggactatttaaagatgatgaaatttagagtggttaagcaaacatattcagtataaagcaaaactagagcttacctcttcacattt |
111 |
Q |
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| T |
9163177 |
aaaggccggacggatggactatttaaagatgatgaaatttagagtggttaagcaaacatattcggtataaagcaaaactagagcttacctcttcacattt |
9163276 |
T |
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| Q |
112 |
taatcttgccttaaatttagctgcaagctcctttatggttaatggagtgctttgcattagaacagccataatttcttcctcagttacaggtccagaagct |
211 |
Q |
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| T |
9163277 |
taatcttgccttaaatttagctgcaagctcctttatggttaatggagtgctttgcattagaacagccctaatttcttcctcagttacaggtccagaagct |
9163376 |
T |
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| Q |
212 |
gtgttagaagacccagcgtttgatgactggggtggtgtacctcttggaggtccattacttttggacgtagatccatttacatcttttccagatgattttg |
311 |
Q |
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| T |
9163377 |
---------------gcgtttgatgactggggtggtgtacctcttggaggtccattacttttggacgtagatccatttacatcttttccagatgattttg |
9163461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 23 - 313
Target Start/End: Original strand, 9150527 - 9150827
Alignment:
| Q |
23 |
ggatggactatttaaagatgatgaaatttagagtggttaagcaaacatattcagtataaa----------gcaaaactagagcttacctcttcacatttt |
112 |
Q |
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| T |
9150527 |
ggatggactgtgtaaagataatgaaatttagaatggctaagcaaacatattcagtttaaacaaggagaaagaaaaattagaacatacctctttacatctt |
9150626 |
T |
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| Q |
113 |
aatcttgccttaaatttagctgcaagctcctttatggttaatggagtgctttgcattagaacagccataatttcttcctcagttacaggtccagaagctg |
212 |
Q |
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| T |
9150627 |
aatcttgccctaaatttagctacaagctcctgtgtggttaacggagtcctctgcagtagaacagccttaatttcttcctcggttacaggtccagaagctg |
9150726 |
T |
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| Q |
213 |
tgttagaagacccagcgtttgatgactggggtggtgtacctcttggaggtccattacttttggacgtagatccatttacatcttttccagatgattttgg |
312 |
Q |
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| T |
9150727 |
cattagaagacccagagtttgatgacggtggtggtgtacctcttggaggtgcattacttttggacgaagatccattgacatcttttgcagaagattttgg |
9150826 |
T |
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| Q |
313 |
t |
313 |
Q |
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| T |
9150827 |
t |
9150827 |
T |
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