View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1257_low_18 (Length: 303)

Name: NF1257_low_18
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1257_low_18
NF1257_low_18
[»] chr4 (2 HSPs)
chr4 (138-231)||(35919911-35920004)
chr4 (63-138)||(10348330-10348405)
[»] chr2 (3 HSPs)
chr2 (138-231)||(20613285-20613378)
chr2 (138-232)||(1704558-1704653)
chr2 (138-231)||(1700140-1700234)
[»] chr8 (1 HSPs)
chr8 (138-204)||(179748-179814)
[»] chr1 (1 HSPs)
chr1 (63-138)||(48711502-48711577)
[»] chr5 (2 HSPs)
chr5 (66-138)||(22112797-22112868)
chr5 (66-138)||(27525599-27525671)
[»] scaffold0121 (1 HSPs)
scaffold0121 (66-126)||(33051-33111)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 35920004 - 35919911
Alignment:
Q  138 aggtagttatctcttaatgccaaggcatattgttgtacttaaatacatgtatcagcaatacataattgaaacaattgccattcaaactcttata 231  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35920004 aggtagttatctcttaatgccaaggcatatcgttgtacttaaatacatgtatcagcaatacataattaaaacaattgccattcaaactcttata 35919911  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 10348405 - 10348330
Alignment:
Q  63 agctgttgctgtcgttacacattccataatccaggaacgccataatatcggaaaattcattttaagcatcacttca 138  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||    
T  10348405 agctgttgctgtcgttacgcactccataatccaggcacgccataataacggaaaattcattttagacatcacttca 10348330  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 20613378 - 20613285
Alignment:
Q  138 aggtagttatctcttaatgccaaggcatattgttgtacttaaatacatgtatcagcaatacataattgaaacaattgccattcaaactcttata 231  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20613378 aggtagttatctcttaatgccaaggcatatcgttgtacttaaatacatgtatcagcaatacataataaaaacaattgccattcaaactcttata 20613285  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 1704558 - 1704653
Alignment:
Q  138 aggtagttatctcttaatgccaaggcatattgttgtacttaaatacatgtatcagcaatacataatt-gaaacaattgccattcaaactcttatac 232  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  1704558 aggtagttatctcttaatgccaaggcatatcgttgtacttaaatacatgtatcagcaatacataattaaaaacaattgccattcaaactcttatac 1704653  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 1700140 - 1700234
Alignment:
Q  138 aggtagttatctcttaatgccaaggcatattgttgtacttaaatacatgtatcagcaatacataatt-gaaacaattgccattcaaactcttata 231  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  1700140 aggtagttatctcttaatgccaaggcatatcgttgtacttaaatacatgtatcagcaatacataattaaaaacaattgccattcaaactcttata 1700234  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 179748 - 179814
Alignment:
Q  138 aggtagttatctcttaatgccaaggcatattgttgtacttaaatacatgtatcagcaatacataatt 204  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  179748 aggtagttatctcttaatgctaaggcatatcgttgtacttaaatacatgtatcagcaatacataatt 179814  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 48711502 - 48711577
Alignment:
Q  63 agctgttgctgtcgttacacattccataatccaggaacgccataatatcggaaaattcattttaagcatcacttca 138  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||    
T  48711502 agctgttgctgtcgttacacactccataatccaggcacgccataataacggaaaattcattttagacatcacttca 48711577  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 22112868 - 22112797
Alignment:
Q  66 tgttgctgtcgttacacattccataatccaggaacgccataatatcggaaaattcattttaagcatcacttca 138  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  22112868 tgttgctgtcgttacgcactccataatccaggaacgccataatatcgg-aaattcattttagacatcacttca 22112797  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 27525599 - 27525671
Alignment:
Q  66 tgttgctgtcgttacacattccataatccaggaacgccataatatcggaaaattcattttaagcatcacttca 138  Q
    ||||| ||||||||| || |||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  27525599 tgttgttgtcgttacgcactccataatccaggaacaccataatatcggaaaattcattttagacatcacttca 27525671  T

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Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 33051 - 33111
Alignment:
Q  66 tgttgctgtcgttacacattccataatccaggaacgccataatatcggaaaattcatttta 126  Q
    ||||| |||||| ||||| ||||||||||| || |||||||| | ||||||||||||||||    
T  33051 tgttgttgtcgtgacacactccataatccaagagcgccataacaccggaaaattcatttta 33111  T

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