View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_2 (Length: 538)
Name: NF1257_low_2
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 110 - 352
Target Start/End: Original strand, 6035631 - 6035875
Alignment:
| Q |
110 |
tcaatataaagggatacttcattcttcttgtatgagnnnnnnnnn--cttagaccttaacctcttccaggactgttaaaattcattttcatcccttgtta |
207 |
Q |
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| T |
6035631 |
tcaatataaagggatacttcattctttttgtatgagaaaaaaaaaaacttagaccttaacctcttcgaggactgttaaaattcattttcatcccttgtta |
6035730 |
T |
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| Q |
208 |
tatttacttcataccttatatattgttataaataaattatggtccattattattaagcattaattcgttcgttaatttatatttgtcgggttatatttct |
307 |
Q |
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| T |
6035731 |
tatttacttcataccttatatattgttataaataaattatggtccattattattaagcactaattcgttcgttaatttatatttgtcgggttatatttct |
6035830 |
T |
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| Q |
308 |
aaatggagcttgattgattaggccgttttgttaaacctaatgtga |
352 |
Q |
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| T |
6035831 |
aaatggagcttgattgattaggctgttttgttaaacctaatgtga |
6035875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 394 - 533
Target Start/End: Original strand, 6035875 - 6036014
Alignment:
| Q |
394 |
attatattaaaaaccgtttaatatggtgaaaacctaagaatccatgaagatattgcatctttctctacaaataacaattctctcatcatctctcgaatct |
493 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6035875 |
attatattaaaacccgtttaatatggtgaaaacctaagaatccatgaagatattgcatctttctctacaaataacaattctctcatcatctctcgaatct |
6035974 |
T |
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| Q |
494 |
acagaacctaaaggtacgcacactaatttgtacctatgat |
533 |
Q |
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| T |
6035975 |
atagaacctaaaggtatgcacactaatttgtatctatgat |
6036014 |
T |
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