View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_21 (Length: 257)
Name: NF1257_low_21
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 38532868 - 38533034
Alignment:
| Q |
91 |
aagcaaagtttatccccacatgtacataaatagattagaaacacaataaggagagtctaataaaagcttcttcacaaatgtgtaacacggtttcaaagca |
190 |
Q |
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| T |
38532868 |
aagcaaagtttatccccacatgtacataaatagattagaaacacaataaggagagtctaataaaagcttcttcacaaatgtgtaacacggtttcaaagca |
38532967 |
T |
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| Q |
191 |
tnnnnnnntgatacctgacttcaacccttcatttgagagattcatttcattctcactcattttagat |
257 |
Q |
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| T |
38532968 |
taaaaaaatgatacctgacttcaacccttcatttgagagattcatttcattctcactcattttagat |
38533034 |
T |
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