View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_26 (Length: 237)
Name: NF1257_low_26
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 35273768 - 35273615
Alignment:
| Q |
84 |
acaatattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgtta |
183 |
Q |
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| T |
35273768 |
acaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgtta |
35273669 |
T |
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| Q |
184 |
tcttagcagcagcacttaacttgtgcctgcggattccgatgaagatcttatcct |
237 |
Q |
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| T |
35273668 |
tcttagcagcagcacttaacttgtgcctgcggattccgatgaagatcttatcct |
35273615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 17976350 - 17976462
Alignment:
| Q |
82 |
caacaatattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgt |
181 |
Q |
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| T |
17976350 |
caacaaaattacaccaacctttagccgttggataatacacaacttcaaaagccaagttcttatccgccaattccactgcctccgtaaacgatttttctgt |
17976449 |
T |
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| Q |
182 |
tatcttagcagca |
194 |
Q |
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| T |
17976450 |
tatcttagcagca |
17976462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 8823727 - 8823655
Alignment:
| Q |
122 |
aacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatcttagcagca |
194 |
Q |
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| T |
8823727 |
aacttcaaaagcgatgttcttattcgccaactccactgcctccataaccgattctttagttatcttagcagca |
8823655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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