View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_3 (Length: 506)
Name: NF1257_low_3
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 494
Target Start/End: Original strand, 39923364 - 39923835
Alignment:
| Q |
13 |
aatatgtgtaatattacatatatttaaatgaatttgtaatctttgctacttgattactcctcacaaatatatagtagtacatattgttggtagaacaata |
112 |
Q |
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| T |
39923364 |
aatatgtgtaatattacatatatttaaatgaatttgtaatctttgctacttgattactcctcacacatatataatagtacatattgttggtagaacaata |
39923463 |
T |
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| Q |
113 |
tttggttagactttacttactttctgatcgaattccagatttttagggtccttttctttcaagaaccggagggttaacaccaaaaagtacatgttgttgg |
212 |
Q |
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| T |
39923464 |
tttggttagactttacttactttttaatcgaatttcagatttttagggtccttttctttcaagaactggagggttaacaccaaaaagtacatgttgttgg |
39923563 |
T |
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| Q |
213 |
atcatgaagcgagcacaaggatcattaaattgcactaaaaatagctacacaagtgagttgcacactacatctttacctctaattaatctataaagcgata |
312 |
Q |
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| T |
39923564 |
attatgaagcgagcacaaggatcattaaattgcactaaaaacagctacacaagtgagttgcacactacatctttacctc----taatctataaagcgata |
39923659 |
T |
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| Q |
313 |
cctgcttgctttgacataatttaaaattaatgatatagagttattcgtgagactcttatcgtaccatttttgtagaggtgcgggttaaatggattgaaag |
412 |
Q |
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| T |
39923660 |
cctgcttgctttgacataatttaaaattaatgatatagagttattcgtgagactcttatcgtaacatttttgtagaggtgcgggttaaatggattgaatg |
39923759 |
T |
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| Q |
413 |
tttatcagatattattataaaatcataactgggtgatatatatataaataccaaaagtggtgtatgccgactagaactcaca |
494 |
Q |
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| T |
39923760 |
tttatcagatattattataaaatcataactgggtg------atataaataccaaaagtggtgtatgccgactagaactcaca |
39923835 |
T |
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