View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_4 (Length: 436)
Name: NF1257_low_4
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 38548816 - 38548401
Alignment:
| Q |
16 |
aaatatcacgttagaaatcaataggctcggtcactaatctatttgttaacacacatgtgctttgaatttaacgttggacttgaaatgtatgtttttggag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38548816 |
aaatatcacgttagaaatcaataggctcggtcactaatctatttgttaacacacatgtgctttgaatttaacgttggacttgaaatgtatgtttttggag |
38548717 |
T |
|
| Q |
116 |
agcaatttttgaagcatatagagcctttgtttgaacaagtcaatcttgaccacatgcatttggaaaatatgtgactaactaatagtaaacattcgtagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38548716 |
agcaatttttgaagcatatagagcctttgtttgaacaagtcaatcttgaccacatgcatttggaaaatatgtcactaactaatagtaaacattcgtagta |
38548617 |
T |
|
| Q |
216 |
aagt-nnnnnnnnnnctaatagtaaactttcaagtttcaatcttgattacattcttttgaacaagtcaatcttgactacatgtattgttatatgattaaa |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38548616 |
aagtaaaaaaagaaattaatagtaaactttcaagtttcaatcttgattacattcttttgaacaagtcaatcttgactacatgtatggttatatgattaaa |
38548517 |
T |
|
| Q |
315 |
atttactcctgttaggactttgggcatacatnnnnnnngcacgggcgtgagtattttggatcgggatttagacgagaataatcccctcaagtgacatgag |
414 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38548516 |
atttactcctgttaggactttgggcatacataaaaaaagcacgggcgtgcgtattttggatcgggatttaaacgagaataatcccctcaagtgacatgag |
38548417 |
T |
|
| Q |
415 |
tgaatagtataatcta |
430 |
Q |
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||||||||| |||||| |
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| T |
38548416 |
tgaatagtagaatcta |
38548401 |
T |
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