View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_5 (Length: 428)
Name: NF1257_low_5
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 82 - 339
Target Start/End: Complemental strand, 47570193 - 47569936
Alignment:
| Q |
82 |
cataggtcaaatgttacttgtgctccttgccagatttcaatgcataaagacccattcaaggttcatattattgtgctgtccatccagcagatggtcaaaa |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47570193 |
cataggtcaaatgttacttgtgctccttgccagatttcaatgcataaagacccattcaaggttcatattattgtgctgtccatccagcagatggtcaaaa |
47570094 |
T |
|
| Q |
182 |
gaaatgtggaaaaaatatatggatgaaatggaaactgttatcctaaagaaattgagaaaattctgaacatctcatctcagttgtaaaaaatgagtggttt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47570093 |
gaaatgtggaaaaaatatatggatgaaatggaaactgttatcctaaagaaattgagaaaattctgaacatctcatctcagttgtaaaaaatgagtggttt |
47569994 |
T |
|
| Q |
282 |
aaacgactaatatctctcaccgaaatataggagaaatgtatcaactccattgcaaact |
339 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47569993 |
aaacgactaatatctctcaccgaaatataggagaaatgtatcaactccattgcaaact |
47569936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 338
Target Start/End: Original strand, 21158137 - 21158390
Alignment:
| Q |
82 |
cataggtcaaatgttactt-gtgctccttgccagatttcaatgcataaagacccattcaaggttcatattattgtgctgtccatccagcagatggtcaaa |
180 |
Q |
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|||||||||||||| | || ||| |||| |||||||||||||||||||||| | || ||| |||||| || ||||||||| ||| ||||||| ||||| |
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| T |
21158137 |
cataggtcaaatgtaaatttgtgttcctcaccagatttcaatgcataaagactcgttaaagattcataataatgtgctgtctatcgagcagataatcaaa |
21158236 |
T |
|
| Q |
181 |
agaaatgtg-----gaaaaaatatatggatgaaatggaaactgttatcctaaagaaattgagaaaattctgaacatctcatctcagttgtaaaaaatgag |
275 |
Q |
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||||| ||| ||||| ||||||| | |||||| | ||||| ||||||||||||||||| |||| ||| |||||||||| | | | || |
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| T |
21158237 |
agaaaggtgaaaattaaaaattatatggct------gaaactataatcctgaagaaattgagaaaattatgaagatcccatctcagtttt---gagtaag |
21158327 |
T |
|
| Q |
276 |
tggtttaaacgactaatatctctcaccgaaatataggagaaatgtatcaactccattgcaaac |
338 |
Q |
| |
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||| ||||| |||||| || ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
21158328 |
tggcttaaaagactaacatgtctcattgaaatataggagaaatgtatcaactccatcgcaaac |
21158390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 28232593 - 28232481
Alignment:
| Q |
84 |
taggtcaaatgttacttgtgctccttgccagatttcaatgcataaagacccattcaaggtt-catattattgtgctgtccatccagcagatggtcaaaag |
182 |
Q |
| |
|
|||||||||| | | || || |||||||||||||| ||||||| ||| ||| | |||||| |||| ||||||||||||| ||||||| || |||||||| |
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| T |
28232593 |
taggtcaaatataatttttgttccttgccagattttaatgcatgaagccccgattaaggtttcataatattgtgctgtccttccagcacatagtcaaaag |
28232494 |
T |
|
| Q |
183 |
aaatgtggaaaaa |
195 |
Q |
| |
|
||||||||||||| |
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| T |
28232493 |
aaatgtggaaaaa |
28232481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 336
Target Start/End: Complemental strand, 4745368 - 4745252
Alignment:
| Q |
212 |
gaaactgttatcctaaagaaattgagaaaattctgaacatctcatctcagttgtaaaaaatgagtggtttaaacgactaatatctctcaccgaaatatag |
311 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||||||||||||||||||| || | || | |||| ||||| |||||| |||| ||||||||| |
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| T |
4745368 |
gaaactattatccttaagaaatagagaaaattctgaacatctcatctcaattttgaaca---agtgacttaaaagactaa-----ctcatagaaatatag |
4745277 |
T |
|
| Q |
312 |
gagaaatgtatcaactccattgcaa |
336 |
Q |
| |
|
||||||||||||||||||| ||||| |
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|
| T |
4745276 |
gagaaatgtatcaactccactgcaa |
4745252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 28240100 - 28240050
Alignment:
| Q |
213 |
aaactgttatcctaaagaaattgagaaaattctgaacatctcatctcagtt |
263 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
28240100 |
aaactattatcctaaagtaattgagaaaatactgaacatctcatctcagtt |
28240050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 24620843 - 24620947
Alignment:
| Q |
82 |
cataggtcaaatgttacttgtgctccttgccagatttcaatgcataaagacccattcaaggttcatattattgtgctgtccatccagcagatggtcaaaa |
181 |
Q |
| |
|
|||||||||||||| | || | |||| ||||||||| |||| || |||||| ||| ||||||||||| |||||| |||||||||||| || ||||| | |
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| T |
24620843 |
cataggtcaaatgtagcatgggttcctcgccagatttaaatgaatgaagacctatttaaggttcatatcattgtgtcgtccatccagcatatagtcaaca |
24620942 |
T |
|
| Q |
182 |
gaaat |
186 |
Q |
| |
|
||||| |
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|
| T |
24620943 |
gaaat |
24620947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 24620992 - 24621035
Alignment:
| Q |
296 |
tctcaccgaaatataggagaaatgtatcaactccattgcaaact |
339 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24620992 |
tctcaccgaaatatatgagaaacgtatcaactccattgcaaact |
24621035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 199 - 339
Target Start/End: Complemental strand, 1062427 - 1062288
Alignment:
| Q |
199 |
tatggatgaaatggaaactgttatcctaaagaaattgagaaaattctgaacatctcatctcagttgtaaaaaatgagtggtttaaacgactaa-tatctc |
297 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||| |||||||| |||||| |||||| |
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| T |
1062427 |
tatggatgaaattgaaactgttatcctaaagaaattgagaaaatcctgaacatctcatttcagtctt---gaatgatcggtttaaaagactaattatctc |
1062331 |
T |
|
| Q |
298 |
tcaccgaaatataggagaaatgtatc-aactccattgcaaact |
339 |
Q |
| |
|
||||| ||||| |||||||| ||||| || ||||||||||||| |
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|
| T |
1062330 |
tcaccaaaatagaggagaaacgtatcaaattccattgcaaact |
1062288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 1637996 - 1637895
Alignment:
| Q |
83 |
ataggtcaaatgttacttgtgctccttgccagatttcaatgcataaagacccattcaaggttcatattattgtgctgtccatccagcagatggtcaaaag |
182 |
Q |
| |
|
||||||||||||| | ||||| |||| |||||||||||||||||||||| | || ||| |||||| || |||| |||| ||||||||||| ||||||| |
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|
| T |
1637996 |
ataggtcaaatgtaatttgtgttcctc-ccagatttcaatgcataaagactcgtttaagattcataataatgtgatgtctatccagcagataatcaaaag |
1637898 |
T |
|
| Q |
183 |
aaa |
185 |
Q |
| |
|
||| |
|
|
| T |
1637897 |
aaa |
1637895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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