View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_7 (Length: 418)
Name: NF1257_low_7
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 80 - 418
Target Start/End: Complemental strand, 54479594 - 54479257
Alignment:
| Q |
80 |
cagtatcatagggtctgggatgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgt |
179 |
Q |
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| T |
54479594 |
cagtatcaaagggtctgggatgatcaagttgtttgca-gagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgt |
54479496 |
T |
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| Q |
180 |
gtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattac |
279 |
Q |
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| T |
54479495 |
gtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattac |
54479396 |
T |
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| Q |
280 |
cggcttcacactgttttgttgattacagtgcacacaattaggcaatgttggcttcgtccaaatggttggcgccctgtcatgcatgtcgttcctgttttcg |
379 |
Q |
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| T |
54479395 |
cggcttcacactgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcatgtcgttcctgttttcg |
54479296 |
T |
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| Q |
380 |
gtaacaaacttcaatatttcaggaaccttttctctcaaa |
418 |
Q |
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| T |
54479295 |
gtaacaaacttcaatatttcaggaaccttttctctcaaa |
54479257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 296
Target Start/End: Original strand, 25044311 - 25044505
Alignment:
| Q |
101 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
200 |
Q |
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| T |
25044311 |
gatcaagttgtttgcat-agttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaatt |
25044409 |
T |
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| Q |
201 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgtttt |
296 |
Q |
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| T |
25044410 |
gtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcacactgtttt |
25044505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 364
Target Start/End: Original strand, 25040598 - 25040835
Alignment:
| Q |
127 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
226 |
Q |
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| T |
25040598 |
ataagtcaaataaagaactctattcttggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatt |
25040697 |
T |
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| Q |
227 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagtgcacacaattaggcaatg |
326 |
Q |
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| T |
25040698 |
tgtcccagcaacagaaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttggcaatt |
25040797 |
T |
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| Q |
327 |
ttggcttcgtccaaatggttggcgccctgtcatgcatg |
364 |
Q |
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| T |
25040798 |
ttggattcatcaaaatttgtggtgccctatcatgcatg |
25040835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 101 - 315
Target Start/End: Original strand, 10124187 - 10124400
Alignment:
| Q |
101 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
200 |
Q |
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| T |
10124187 |
gatcaagttgtttgcaa-agttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaatt |
10124285 |
T |
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| Q |
201 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttg |
300 |
Q |
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| T |
10124286 |
gttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggtttcacacagttttcttg |
10124385 |
T |
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| Q |
301 |
attacagtgcacaca |
315 |
Q |
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| T |
10124386 |
attgcaatgcacaca |
10124400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 296
Target Start/End: Original strand, 28649786 - 28649982
Alignment:
| Q |
99 |
atgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattctt-ggcacctgattcatgattcttggtgtgtttgcagaaatacttca |
197 |
Q |
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| T |
28649786 |
atgatcaagttatttgcat-agttcaagataagttaaataaagaactctattttttggcat-tgttctatgatggttgttatacttgcaaaaatacttca |
28649883 |
T |
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| Q |
198 |
gctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgtttt |
296 |
Q |
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| T |
28649884 |
attgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcggcttcacattgtttt |
28649982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 303
Target Start/End: Complemental strand, 21393244 - 21393068
Alignment:
| Q |
127 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
226 |
Q |
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| T |
21393244 |
ataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatt |
21393145 |
T |
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| Q |
227 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgatt |
303 |
Q |
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| T |
21393144 |
tgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttcttgatt |
21393068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 363
Target Start/End: Original strand, 1975173 - 1975327
Alignment:
| Q |
209 |
gtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagt |
308 |
Q |
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| T |
1975173 |
gtgcaacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaattacaggtttcacactatttttttgattgcaat |
1975272 |
T |
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| Q |
309 |
gcacacaattaggcaatgttggcttcgtccaaatggttggcgccctgtcatgcat |
363 |
Q |
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| T |
1975273 |
gtacacatttaggcaatattggatgcattcaaattgttggtgccctatcacgcat |
1975327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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