View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1257_low_8 (Length: 394)

Name: NF1257_low_8
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1257_low_8
NF1257_low_8
[»] chr8 (14 HSPs)
chr8 (11-228)||(4703261-4703478)
chr8 (260-365)||(4703156-4703260)
chr8 (76-117)||(4913870-4913911)
chr8 (76-158)||(4890319-4890399)
chr8 (80-117)||(4776925-4776962)
chr8 (76-117)||(4904744-4904785)
chr8 (46-113)||(4714726-4714793)
chr8 (76-110)||(4925334-4925368)
chr8 (63-117)||(4996001-4996055)
chr8 (76-109)||(4736439-4736472)
chr8 (70-110)||(10452104-10452144)
chr8 (67-117)||(4681073-4681123)
chr8 (76-110)||(10446446-10446480)
chr8 (76-116)||(4688702-4688742)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 4703478 - 4703261
Alignment:
Q  11 ttattctgaagtaatagatcattgttactgctgtttaatagtttaaaaccagatttaaaaggattccagatgcggtcataaacatcatctttgtacctgt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4703478 ttattctgaagtaatagatcattgttactgctgtttaatagtttaaaaccagatttaaaaggattccagatgcggtcataaacatcatctttgtacctgt 4703379  T
Q  111 tgtttgtgtacatgacnnnnnnnnttgtcaataaattgactttgatattacatacatattgaagtaagctaattaatatgttcctagctggcaccatgca 210  Q
    ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4703378 tgtttgtgtacatgacaaaaaaaattgtcaataaattgactttgatattacatacatattgaagtaagctaattaatatgttcctagctggcaccatgca 4703279  T
Q  211 atttcaaatctttttatt 228  Q
    ||||||||||||||||||    
T  4703278 atttcaaatctttttatt 4703261  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 260 - 365
Target Start/End: Complemental strand, 4703260 - 4703156
Alignment:
Q  260 gatccgttcacttccggtgtcacacttaacaaaatttacacatgtaataattttttataaaataccaaatttatctacgtgtattaactaatgttattgt 359  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4703260 gatccgttcacttccggtgtcacacttaacaaaatt-acacatgtaataattttttataaaatacaaaatttatctacgtgtattaactaatgttattgt 4703162  T
Q  360 tttatt 365  Q
    ||||||    
T  4703161 tttatt 4703156  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 4913870 - 4913911
Alignment:
Q  76 ccagatgcggtcataaacatcatctttgtacctgttgtttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4913870 ccagatgcggtcataaacatcatctttgtacctgttgtttgt 4913911  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 4890319 - 4890399
Alignment:
Q  76 ccagatgcggtcataaacatcatctttgtacctgttgtttgtgtacatgacnnnnnnnnttgtcaataaattgactttgatat 158  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||||||||        || |||||||||||||||||||||    
T  4890319 ccagatgcggtcaaaaacatcatctttgtacctgttgtt--tgtacatgaccaagaaaattatcaataaattgactttgatat 4890399  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 4776925 - 4776962
Alignment:
Q  80 atgcggtcataaacatcatctttgtacctgttgtttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4776925 atgcggtcataaacatcatctttgtacctgttgtttgt 4776962  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 4904744 - 4904785
Alignment:
Q  76 ccagatgcggtcataaacatcatctttgtacctgttgtttgt 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4904744 ccagatgcggtcataaacatcatctttgtacctattgtttgt 4904785  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 4714793 - 4714726
Alignment:
Q  46 taatagtttaaaaccagatttaaaaggattccagatgcggtcataaacatcatctttgtacctgttgt 113  Q
    |||| ||||||||| ||| ||| |||||  |||||| |||||||||||||||||||||||||| ||||    
T  4714793 taatcgtttaaaactagaattagaaggaaaccagatccggtcataaacatcatctttgtacctattgt 4714726  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 4925334 - 4925368
Alignment:
Q  76 ccagatgcggtcataaacatcatctttgtacctgt 110  Q
    |||||||||||||||||||||||||||||||||||    
T  4925334 ccagatgcggtcataaacatcatctttgtacctgt 4925368  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 4996055 - 4996001
Alignment:
Q  63 atttaaaaggattccagatgcggtcataaacatcatctttgtacctgttgtttgt 117  Q
    ||||||| |||  |||||| ||||| |||||||||||||||||||||||||||||    
T  4996055 atttaaagggaaaccagattcggtcgtaaacatcatctttgtacctgttgtttgt 4996001  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 4736472 - 4736439
Alignment:
Q  76 ccagatgcggtcataaacatcatctttgtacctg 109  Q
    ||||||||||||||||||||||||||||||||||    
T  4736472 ccagatgcggtcataaacatcatctttgtacctg 4736439  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 10452144 - 10452104
Alignment:
Q  70 aggattccagatgcggtcataaacatcatctttgtacctgt 110  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  10452144 aggataccagatgcggtcaaaaacatcatctttgtacctgt 10452104  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 4681123 - 4681073
Alignment:
Q  67 aaaaggattccagatgcggtcataaacatcatctttgtacctgttgtttgt 117  Q
    ||||| || ||||||||| ||  ||||||||||||||||||||||||||||    
T  4681123 aaaagcataccagatgcgatctaaaacatcatctttgtacctgttgtttgt 4681073  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 10446480 - 10446446
Alignment:
Q  76 ccagatgcggtcataaacatcatctttgtacctgt 110  Q
    ||||||||||||| |||||||||||||||||||||    
T  10446480 ccagatgcggtcaaaaacatcatctttgtacctgt 10446446  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 4688742 - 4688702
Alignment:
Q  76 ccagatgcggtcataaacatcatctttgtacctgttgtttg 116  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  4688742 ccagacgcgatcaaaaacatcatctttgtacctgttgtttg 4688702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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