View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258-Insertion-2 (Length: 232)
Name: NF1258-Insertion-2
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 39369523 - 39369297
Alignment:
| Q |
6 |
catatattgcacctacatgacatcagcgcttaccaataatgacatgataaaagatattttgcatggtacatcgttctcatctttaaacgtatatgttttt |
105 |
Q |
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| T |
39369523 |
catatattgcacctacatgacatcagcgcttaccaataatgacatgataaaagatattttgcatggtacatcgttctcatctttaaacgtatatgtttta |
39369424 |
T |
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| Q |
106 |
acaacatccgttatatgcttcaccaatatctctgcaacattaacctcgtttggcttgagcattgagtccatcccgttcaacacatcctcagctgcacgct |
205 |
Q |
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| T |
39369423 |
acaacatccgttatatgcttcaccaatatctctgcaacattaacctcgtttggcttgagcattgagtccatcccgttcaacacatcctcagctgcacgct |
39369324 |
T |
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| Q |
206 |
ttgtcagaagaagtggatgatcacata |
232 |
Q |
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| T |
39369323 |
ttgtcagaagaagtggatgatcacata |
39369297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 39355339 - 39355114
Alignment:
| Q |
7 |
atatattgcacctacatgacatcagcgcttaccaataatgacatgataaaagatattttgcatggtacatcgttctcatctttaaacgtatatgttttta |
106 |
Q |
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|||||||||| |||||||||| || |||||||||||||||||||| ||| ||||||||||| |||||| | || |||| |||| ||| ||||| | |
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| T |
39355339 |
atatattgcatgcacatgacatcggcacttaccaataatgacatgatgaaaactattttgcatgatacatcatgcttgtcttcaaacttatctgtttctg |
39355240 |
T |
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| Q |
107 |
caacatccgttatatgcttcaccaatatctctgcaacattaacctcgtttggcttgagcattgagtccatcccgttcaacacatcctcagctgcacgctt |
206 |
Q |
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| T |
39355239 |
caacatctgctatatgcatcgctaatttttccgcaacattaacctcctctggctttagcattgattccaacccatccaatacatcctccgcagcccgctt |
39355140 |
T |
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| Q |
207 |
tgtcagaagaagtggatgatcacata |
232 |
Q |
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|||| ||||| ||||||||||||| |
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| T |
39355139 |
agtcaacagaagcggatgatcacata |
39355114 |
T |
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