View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_high_2 (Length: 714)
Name: NF12580_high_2
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 16 - 697
Target Start/End: Original strand, 36311462 - 36312143
Alignment:
| Q |
16 |
gacaactgcatatatccttaagaaacatcaagcaattcttctagttaacgccatagactccaatcctgtcgataatgttggccacagtctccttgctttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
36311462 |
gacaactgcatatatccttaagaaacatcaagcaattcttctagttaacgccatagactccaatcctgtccataatattggccacagtctccttgctttc |
36311561 |
T |
|
| Q |
116 |
tctaagaactttcacactgctgcttaatctttgtctcttaccagaaatagatggagattcctcaagcagcctctcaacactgccaccaagttcattacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311562 |
tctaagaactttcacactgctgcttaatctttgtctcttaccagaaatagatggagattcctcaagcagcctctcaacactgccaccaagttcattacaa |
36311661 |
T |
|
| Q |
216 |
atctccttctgcagatcattgctaatcagttcattgatgctaagcatcaaatgcaaagcaatactatcaatgagcctcctcagcacaatcttccaatagg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36311662 |
atctccttctgcagatcattgctaatcagttcattgatgctaagcatcaaatgcaaagcaatactatcaatgagcctcctcagtacaatcttccaatagg |
36311761 |
T |
|
| Q |
316 |
caattaatcttgccttcaagtcaagggcctgattcaacacattgatcggataaattatcagatgattaactttaatgtcattaactccttcaagcttcac |
415 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
36311762 |
caattaatcttgccttcaagtcaaaggcctgattcaacacattgatcggatacattatcagatgattaactttaatgtcatcaactccttctagcttcac |
36311861 |
T |
|
| Q |
416 |
agtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36311862 |
agtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtactccggattacaagtg |
36311961 |
T |
|
| Q |
516 |
taatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311962 |
taatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaa |
36312061 |
T |
|
| Q |
616 |
cctgcaactggtaatagtttgcagagtggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaac |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36312062 |
cctgcaactggtaatagtttgcagagtggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaac |
36312143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 389 - 651
Target Start/End: Original strand, 36304295 - 36304557
Alignment:
| Q |
389 |
aatgtcattaactccttcaagcttcacagtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatat |
488 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||| ||||||| ||| ||| |||| ||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
36304295 |
aatgtcaccaacaccttccagcttcacagtacttgaagctcgatcaacattcaatacttctttcaaaaacacttctcgatgagacatcagcttgttatac |
36304394 |
T |
|
| Q |
489 |
tcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataa |
588 |
Q |
| |
|
||||||||||| || || |||| ||||| || || |||||||||| ||||||||||| | |||||| ||||||||||| | |||||||||| |||| |
|
|
| T |
36304395 |
tcctgcaagtactcagggttacccgtgtagtctgtaagcttctccatctcaacagcttgaagcacatgctgaatggaattctttttcttcttagagataa |
36304494 |
T |
|
| Q |
589 |
catgctccacagctctacgagtagcaacctgcaactggtaatagtttgcagagtggcgattca |
651 |
Q |
| |
|
||||| ||||||||||| | | |||||| | ||| |||||||| ||||| || ||||||| |
|
|
| T |
36304495 |
ggtgctcagcagctctacgaattgaaacctgaagctgataatagttagcagaatgacgattca |
36304557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 67 - 319
Target Start/End: Original strand, 36289021 - 36289285
Alignment:
| Q |
67 |
catagactccaatcctgtcgataatgttggccacagtctccttgctttctctaagaactttcacactgctgcttaatctttgtctcttaccagaaataga |
166 |
Q |
| |
|
|||||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| ||||| | |||| | | ||||| ||||||||||| |
|
|
| T |
36289021 |
catagattccaatcctgtccataattctggcaacagtctccttactttctctaagaactttgacacttcgacttagcttctccctctttccagaaataga |
36289120 |
T |
|
| Q |
167 |
tggagattcctcaagcagcctctcaacactgccacca------------agttcattacaaatctccttctgcagatcattgctaatcagttcattgatg |
254 |
Q |
| |
|
||||| || |||||||||||||||| | |||||| || |||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
36289121 |
cggagactcttcaagcagcctctcaatcccaccaccacttggagacaaaagatcattacaaatctccttctgcaaatcattgttaatcagttcattgatg |
36289220 |
T |
|
| Q |
255 |
ctaagcatcaaatgcaaagcaatactatcaatgagcctcctcagcacaatcttccaataggcaat |
319 |
Q |
| |
|
|| | ||| ||||||| ||| || || |||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
36289221 |
ctcaacattaaatgcagagctatgctgtcaatgagcctccttaaaacaatcttccaataagcaat |
36289285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 36292071 - 36292225
Alignment:
| Q |
41 |
catcaagcaattcttctagttaacgccatagactccaatcctgtcgataatgttggccacagtctccttgctttctctaagaactttcacactgctgctt |
140 |
Q |
| |
|
||||||||| | |||||||||| | ||||| |||||||||||| |||||||||||||| ||||| ||||||||||| | |||| ||||||| ||||| |
|
|
| T |
36292071 |
catcaagcactgcttctagttatctccataatttccaatcctgtccataatgttggccacggtctctttgctttctctcaaaactgtcacactcctgctc |
36292170 |
T |
|
| Q |
141 |
aatctttgtctcttaccagaaatagatggagattcctcaagcagcctctcaacac |
195 |
Q |
| |
|
|| | |||||||| || || || || ||||| |||||||||||||||| ||||| |
|
|
| T |
36292171 |
aacttctgtctcttgcctgatattgaaggagactcctcaagcagcctcttaacac |
36292225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University