View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_high_23 (Length: 285)
Name: NF12580_high_23
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 32679643 - 32679899
Alignment:
| Q |
19 |
tttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32679643 |
tttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaaata |
32679742 |
T |
|
| Q |
119 |
tcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttc |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32679743 |
tcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttc |
32679842 |
T |
|
| Q |
219 |
aaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
275 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32679843 |
aaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttg |
32679899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
| Q |
42 |
aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
32679630 |
aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa |
32679676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 78 - 275
Target Start/End: Original strand, 28136025 - 28136218
Alignment:
| Q |
78 |
aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgc-a |
176 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
28136025 |
aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataac-----agctacatgaagaaagagactccatatatgcaa |
28136119 |
T |
|
| Q |
177 |
aaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
275 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||| |||||| |||| |||||||| || ||||||||||| |
|
|
| T |
28136120 |
aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttg |
28136218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 106 - 275
Target Start/End: Complemental strand, 44806795 - 44806627
Alignment:
| Q |
106 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
44806795 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa |
44806696 |
T |
|
| Q |
206 |
cacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
275 |
Q |
| |
|
|| ||||| |||||||||||||| ||| || | |||||| ||||||||| ||| || ||||||||||| |
|
|
| T |
44806695 |
catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttg |
44806627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
| Q |
53 |
ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat |
152 |
Q |
| |
|
|||||||||| ||||||||| | | |||||||||| || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2230609 |
ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat |
2230511 |
T |
|
| Q |
153 |
gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||| |
|
|
| T |
2230510 |
gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca |
2230444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University