View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_high_24 (Length: 257)
Name: NF12580_high_24
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_high_24 |
 | |
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| [»] scaffold0069 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0370 (1 HSPs) |
| | |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 6928593 - 6928365
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6928593 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
6928494 |
T |
|
| Q |
119 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6928493 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
6928394 |
T |
|
| Q |
219 |
ttttcttgtagctggcacattcacaggtt |
247 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
6928393 |
ttttcttgtagctggcacattcataggtt |
6928365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 503839 - 503611
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503839 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
503740 |
T |
|
| Q |
119 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
503739 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
503640 |
T |
|
| Q |
219 |
ttttcttgtagctggcacattcacaggtt |
247 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
503639 |
ttttcttgtagctggcacattcataggtt |
503611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 48721372 - 48721558
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48721372 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgtttgatttttcgcaattttttccatacctctgtgtaaataacccaatattg |
48721471 |
T |
|
| Q |
119 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
48721472 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtcgaagaacaccatgcattgatgggtattgaggccccatattga |
48721558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 52457372 - 52457465
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataaccca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52457372 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataaccca |
52457465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 22838037 - 22838265
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22838037 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
22838136 |
T |
|
| Q |
119 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22838137 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
22838236 |
T |
|
| Q |
219 |
ttttcttgtagctggcacattcacaggtt |
247 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
22838237 |
ttttcttgtagctggcacattcataggtt |
22838265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 14540336 - 14540108
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14540336 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
14540237 |
T |
|
| Q |
119 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14540236 |
gttcacaatcaataacatcttcaccatccagattaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
14540137 |
T |
|
| Q |
219 |
ttttcttgtagctggcacattcacaggtt |
247 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
14540136 |
ttttcttgtagctggcacattcataggtt |
14540108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 52759 - 52959
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52759 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccacaattttttccatacctctgtcaaaataacccaatattg |
52858 |
T |
|
| Q |
119 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
218 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52859 |
gttcacaat----------------------agtaacaataagtcgaagaacaccattcatcgatgggtgttgaggccccatattgactatcatgaggtc |
52936 |
T |
|
| Q |
219 |
ttttcttgtagctggcacattca |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52937 |
ttttcttgtagctggcacattca |
52959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 20373597 - 20373797
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20373597 |
gtagctaaataatcccaacgtgtttcataaggcagatattgtataattgttcgattttccacaattttttccatacctctgtcaaaataacccaatattg |
20373696 |
T |
|
| Q |
119 |
gttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtc |
218 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20373697 |
gttcacaat----------------------agtaacaataagtcgaagaacaccattcatcgatgggtgttgaggccccatattgactatcatgaggtc |
20373774 |
T |
|
| Q |
219 |
ttttcttgtagctggcacattca |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
20373775 |
ttttcttgtagctggcacattca |
20373797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 13591386 - 13591444
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttcc |
78 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
13591386 |
gtagctaaataatcc-aacgtgttatataaggtagatattgtataattgttcgattttcc |
13591444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 178773 - 178974
Alignment:
| Q |
27 |
ataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattggttcacaa |
126 |
Q |
| |
|
||||||||| | |||||||||||| | ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| || ||||| ||||||||| |
|
|
| T |
178773 |
ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaa |
178872 |
T |
|
| Q |
127 |
tcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtcttttcttg |
226 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |
|
|
| T |
178873 |
tcaataacatcctcaccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactatcatgagatctttttttg |
178972 |
T |
|
| Q |
227 |
ta |
228 |
Q |
| |
|
|| |
|
|
| T |
178973 |
ta |
178974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 1 - 97
Alignment:
| Q |
40 |
gttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattggttcacaatcaataacat |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
gttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattggttcacaatcaataacat |
97 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 23765145 - 23765050
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||| |
|
|
| T |
23765145 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgatttttcgcaattttttccatatctttgtgtaaacaacccaat |
23765050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 14178 - 14224
Alignment:
| Q |
19 |
gtagctaaataatcccaacgtgttacataaggcagatattgtataat |
65 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14178 |
gtagctaaataatcccaatgtgttacataaggcagatattgtataat |
14224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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