View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12580_high_32 (Length: 211)

Name: NF12580_high_32
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12580_high_32
NF12580_high_32
[»] chr1 (15 HSPs)
chr1 (5-194)||(19279305-19279494)
chr1 (5-193)||(13271453-13271641)
chr1 (5-173)||(13081002-13081170)
chr1 (21-173)||(30368261-30368413)
chr1 (6-191)||(12964013-12964198)
chr1 (5-172)||(13085995-13086162)
chr1 (23-173)||(13070331-13070481)
chr1 (30-173)||(13244683-13244826)
chr1 (30-173)||(13094286-13094429)
chr1 (21-173)||(13100888-13101039)
chr1 (23-194)||(13204325-13204496)
chr1 (21-173)||(13007087-13007239)
chr1 (5-149)||(13065350-13065494)
chr1 (30-202)||(13129686-13129858)
chr1 (30-178)||(13161403-13161551)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 19279305 - 19279494
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19279305 gagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 19279404  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttct 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19279405 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcacattgttactccaaaggtttct 19279494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 13271641 - 13271453
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| || ||||||||||      
T  13271641 gagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagc 13271542  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttc 193  Q
    ||  ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||   ||||||||| | ||||||    
T  13271541 tttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgttactcctagggtttc 13271453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 13081002 - 13081170
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||| ||||||||||||||||||| || || || || |||||||||||||||||||||||||| ||||||||||| || |||||||||| |    
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagt 13081101  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    || |||||||||||||||||||||||||| || ||||  ||||||||||| ||||| ||||||||||||    
T  13081102 tttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcac 13081170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 30368261 - 30368413
Alignment:
Q  21 agaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaa 120  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||| |||| || ||||| ||| | || |||||| ||| |||| |||||||||| |    
T  30368261 agaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaaga 30368360  T
Q  121 tggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  30368361 tggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 30368413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 12964013 - 12964198
Alignment:
Q  6 agatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactt 105  Q
    ||||||| ||||||||||||| |||||||||| || ||||| || ||||||||||| || ||||||||||| ||||| ||| | || ||||||||||  |    
T  12964013 agatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagct 12964112  T
Q  106 tccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtt 191  Q
    |  ||||||||||||||||||| |||  ||| || ||||||||||||||| | || |||||||||||| |||||||||||| ||||    
T  12964113 ttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcactttgttactccaagggtt 12964198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 13086162 - 13085995
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||| ||| |||||| ||| | ||||||||||| | |||||||||||| ||||||||||||||  |||| ||||| || ||||||||||      
T  13086162 gagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagc 13086063  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtca 172  Q
     |  |||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||    
T  13086062 attgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtca 13085995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 13070331 - 13070481
Alignment:
Q  23 aggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatg 122  Q
    |||||| ||||||||||| ||||| |||||||||||||| || ||| ||||||||||||| ||| | || |||||| ||| |||| |||||||||| |||    
T  13070331 aggacacattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatg 13070430  T
Q  123 gttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    || ||||||||| | |||  |||||||||||||||||| ||||||||||||    
T  13070431 gtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac 13070481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 13244683 - 13244826
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    |||||| ||||||| || |||||||||||||| || ||||||||||| ||||| ||| | || |||||| |||  ||| |||||||||||||||||||||    
T  13244683 attataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 13244782  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    || || | ||||||||||||| ||||||||| ||||||||||||    
T  13244783 cttctttgttatggaagtttcgcatacaggtggtggaaggtcac 13244826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 13094429 - 13094286
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    ||||||||||||||||| |||||||||||||| || ||  |||| || ||||  ||| | || |||||||||| |||| |||||||||| ||||| ||||    
T  13094429 attatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcag 13094330  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    ||||| | ||| ||||||||||||||||||| ||||||||||||    
T  13094329 ctgctttgttacggaagtttcacatacaggtggtggaaggtcac 13094286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 13101039 - 13100888
Alignment:
Q  21 agaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaa 120  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||| |||| || ||||| ||| | || || |||||||  ||| |||||||||| |    
T  13101039 agaggacacattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaaga 13100941  T
Q  121 tggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    |||| ||||||||| | |||  |||||||||||||||||| ||||||||||||    
T  13100940 tggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcac 13100888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 13204496 - 13204325
Alignment:
Q  23 aggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatg 122  Q
    |||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| ||||| ||| | || |||||| ||| |||| |||||||||| |||    
T  13204496 aggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatg 13204397  T
Q  123 gttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttct 194  Q
    || ||||||||| | |||  ||| ||||||||| || | ||||||||||||  ||| || |||||| |||||    
T  13204396 gtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttct 13204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 13007239 - 13007087
Alignment:
Q  21 agaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaa 120  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| ||||| ||| | || || |||||||  ||| |||||||||| |    
T  13007239 agaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaaga 13007140  T
Q  121 tggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    |||| ||||| ||| | |||   |||||||||||| |||| |||| |||||||    
T  13007139 tggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcac 13007087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 13065350 - 13065494
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||||| || |||||||||||||||||||| || |||||||||||||| || |||||||| || ||||| ||| | || |||||||| ||     
T  13065350 gagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcacc 13065449  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagttt 149  Q
    ||| || ||||||| |||| ||| || ||| || |||||||||||    
T  13065450 ttcgttgaaatgaagatggctgccgcggctatactatggaagttt 13065494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 13129858 - 13129686
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    ||||||||||||||||| ||||||||| |||| || ||  |||| || ||||  ||| | || |||||| ||| |||| |||||||||| ||||| ||||    
T  13129858 attatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcag 13129759  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttctctgcttct 202  Q
    ||||| | |||  |||||||||||||||||| ||||||||||||  ||| || |||| | ||||| |||||||    
T  13129758 ctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgcttct 13129686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 13161551 - 13161403
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    |||||||||||||| || |||||||||||| | || ||  |||| || ||||  ||| | || |||||| ||| |||| |||||||||| ||||| ||||    
T  13161551 attatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcag 13161452  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgt 178  Q
    ||||| | ||| ||||||||||||||||||| |||||||||||| ||||    
T  13161451 ctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgt 13161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University