View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_high_8 (Length: 417)
Name: NF12580_high_8
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 345
Target Start/End: Complemental strand, 7832700 - 7832528
Alignment:
| Q |
164 |
tgtgacacctctagaaatctcaactatcgataactccaaacaatactactcataattttaattttaatttttataagagtaattaatgtatatagaaatt |
263 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| |
|
|
| T |
7832700 |
tgtgacacctttagaaatctcaactattgataactcaaaa--atactactcataattttaatttt------tataagagtgactaatgtacatagaaatt |
7832609 |
T |
|
| Q |
264 |
acgtcagtatatattacaaccttaatatgtaaaacttatcatacacaaagctgtacttattaatactagtgcatttttgtta |
345 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
7832608 |
acgtcaatatatattacaaccttaatatataaaacttatcataca-aaagctacacttattaatactagtgcatttttgtta |
7832528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 7831557 - 7831491
Alignment:
| Q |
344 |
tatattacattgttaacccagttatttaactagaccttctatgggttaggggtacggatagtctctg |
410 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7831557 |
tatattacatcattgacccatttatttaactagaccctctatgggttaggggtacggatagtctctg |
7831491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 24234136 - 24234202
Alignment:
| Q |
344 |
tatattacattgttaacccagttatttaactagaccttctatgggttaggggtacggatagtctctg |
410 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24234136 |
tatattacatcgttgacccatttatttaactagaccttctatgggttaggggtacgaatagtctctg |
24234202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University