View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_1 (Length: 816)
Name: NF12580_low_1
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 154 - 804
Target Start/End: Complemental strand, 34952926 - 34952278
Alignment:
| Q |
154 |
gaaatatacacactaaagttctagtttgaagcttgtttatgcattttatttttccttttcaaaatctaaatgtgatcttgtttgcatgagatcttgaagt |
253 |
Q |
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| T |
34952926 |
gaaatatacacactaaagttc-agtttgaagctcgtttatgcattttatttttccttttcaaaatctaaatgtgatcttgtttgcatgagatcttgaagt |
34952828 |
T |
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| Q |
254 |
tttaattttgtgtctcaatttcgttttgtccttacatttattataaaactcatcactagttcacgaaataggttttaaaatggggaaaattggttgacaa |
353 |
Q |
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| T |
34952827 |
tttaatttcgtgtctcaatttcgttttgtcgttacatttgttatgaaactcatcactagttcacgaaatagattttaaaaaggggaaaattggttgacga |
34952728 |
T |
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| Q |
354 |
taaagattaatttggttggtgttttgatatggcaatgacaaaaggctaatgttatttcattttggtgaatttgctactattttcttctaggttgtattta |
453 |
Q |
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| T |
34952727 |
taaagattaatttggttggtgttttgatatggcagtgacaaaaggctaatgttatttcattttggtgaatttgctactattttcttctgggttgtattta |
34952628 |
T |
|
| Q |
454 |
tcatgttgttaattctcgtgtttttcattgtgggtttagtcatgaatttgatgatgaattctaggttttagatttgatttatgttgctactttggaaggt |
553 |
Q |
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| T |
34952627 |
tca---tgttaattctcgtgtttttcattgtgggtttagtcatgaatttgatgatgaattctaggttttagatttgatttatgttgctacttaggaaggt |
34952531 |
T |
|
| Q |
554 |
caagtgccttggccgaccaaactagaatgcac---nnnnnnnnnnnnnnngtgcgaccagtgtggtgagatttccaaatcaactcaagtttgtgttggcc |
650 |
Q |
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| T |
34952530 |
caagtgccttggccaaccaaactagaatgcacaaaaaaaaaaaaaaaaaagtgcgaccggtgtggtgagatttccaaatcaactcaagtttgtgttggcc |
34952431 |
T |
|
| Q |
651 |
gggtcataaggaaacccacaaaatcgtatatatcattcaccaccgccatcaccaacacaacaagtgcgtttctattgcatctattgttcaagtttatttg |
750 |
Q |
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| T |
34952430 |
-ggtcataaggaaacccacaaaatcgtatatatcattcaccaccgccatcaccaacacaacaagtgtgtttctattgcatctattgtccaagtttatttg |
34952332 |
T |
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| Q |
751 |
caacaacgaacagataccgaaacatatcgccaattattagcactattgatgtcc |
804 |
Q |
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| T |
34952331 |
caacaacgaacagatactgaaacatatcgccaattattagcacaattgatgtcc |
34952278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 34953062 - 34953022
Alignment:
| Q |
18 |
agttagtatttcacttaatctattacatcttttgacttctt |
58 |
Q |
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| T |
34953062 |
agttagtatttcacttaatctattatatcttttgacttctt |
34953022 |
T |
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