View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_low_11 (Length: 424)
Name: NF12580_low_11
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 44407200 - 44406797
Alignment:
| Q |
1 |
gatatgagtgagttggatttgagagatcctagggagagagcacagggttttatttgaatcataaaatgaaaatgccactaaattcagcaaaaaataacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44407200 |
gatatgagtgagttggatttgagagatcctagggagagagcacagggttttatttgaatcataaaatgaaaatgccactaaattcagcaaaaaataacat |
44407101 |
T |
|
| Q |
101 |
caatgccactggaactatcctatcctaaattttccagcaagagatggctttgccctgaatacatacatgttagtattgtttgccagtaccagacaaatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44407100 |
caatgccactggaactatcctatcctaaattttccagcaagagatggctttgccctgaatacatacatgttagtattgtttgccagtaccagacaaatct |
44407001 |
T |
|
| Q |
201 |
tacacgagtgtcagtgtcagagttaaaaaattactactccatttgtattttttcataaatctctttcattagtaacgagattgacaccaatttttgttcn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44407000 |
tacacgagtgtcagtgtcagagttaaaaaattactactccatttgtattttttcataaatctctttcattagtaacgagattgacaccaatttttgttct |
44406901 |
T |
|
| Q |
301 |
nnnnnnataatttcatgcggctactattttaatcnnnnnnnttatagtctattttttatatcttattaaactagctaccagtattgaatattgattgaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44406900 |
ttttttataatttcatgcggctactattttaatcaaaaaaattatagtctattttttataacttattaaa----ctaccagtattgaatattgattgaat |
44406805 |
T |
|
| Q |
401 |
accctatc |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
44406804 |
accctatc |
44406797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University