View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12580_low_14 (Length: 396)

Name: NF12580_low_14
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12580_low_14
NF12580_low_14
[»] chr6 (22 HSPs)
chr6 (3-381)||(8843128-8843506)
chr6 (16-381)||(8830204-8830566)
chr6 (16-381)||(8833914-8834276)
chr6 (226-381)||(8514711-8514866)
chr6 (228-381)||(5083063-5083216)
chr6 (226-381)||(8527583-8527738)
chr6 (226-381)||(8540751-8540906)
chr6 (266-381)||(8625138-8625253)
chr6 (265-381)||(8647138-8647254)
chr6 (302-381)||(8507400-8507479)
chr6 (306-381)||(8540174-8540249)
chr6 (266-381)||(8549078-8549193)
chr6 (10-153)||(8514495-8514638)
chr6 (10-153)||(8527367-8527510)
chr6 (10-153)||(8540979-8541122)
chr6 (302-372)||(8630463-8630533)
chr6 (10-150)||(8647366-8647506)
chr6 (17-70)||(8507687-8507740)
chr6 (18-69)||(8632050-8632100)
chr6 (35-68)||(8639599-8639632)
chr6 (111-150)||(8627524-8627563)
chr6 (3-68)||(8504602-8504667)
[»] scaffold0155 (4 HSPs)
scaffold0155 (226-381)||(34583-34738)
scaffold0155 (16-70)||(34376-34430)
scaffold0155 (276-381)||(25753-25858)
scaffold0155 (18-70)||(26052-26104)
[»] chr8 (2 HSPs)
chr8 (228-381)||(4538945-4539098)
chr8 (111-153)||(4538828-4538870)
[»] chr4 (2 HSPs)
chr4 (19-70)||(10779787-10779838)
chr4 (19-70)||(10973396-10973447)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 8843128 - 8843506
Alignment:
Q  3 aggagaagcaaagggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttg 102  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8843128 aggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttg 8843227  T
Q  103 atggatattgctgaaaatgatacggcagcaagctattattatcgttgtgattcagattttttggatactgaaaacagtatcttattaaggcttagggatg 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8843228 atggatattgctgaaaatgatacggtagcaagctattattatcgttgtgattcagattttttggatactgaaaacagtatcttattaaggcttagggatg 8843327  T
Q  203 cagaattaaatttacacaatggtaagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaaca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8843328 cagaattaaatttacacaatggtaagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaaca 8843427  T
Q  303 tgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8843428 tgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 8843506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 8830566 - 8830204
Alignment:
Q  16 ggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttgatggatattgctg 115  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||| |||||| | ||| ||||| ||||||||| | | || |||  || |||||||    
T  8830566 ggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataacaattggacccacgcatatgacctaatcagggacatgactgaaattgctg 8830467  T
Q  116 aaaatgatacggcagcaagctattattatcgttgtgattcagattttttggatactgaaaacagtatcttattaaggcttagggatgcagaattaaattt 215  Q
    | |||||||| | |||| |||||||  ||||||||||  | |||||||||||||||   || ||||||   || || |||||||||||||||| ||||||    
T  8830466 agaatgataccgtagcaggctattacgatcgttgtgaaaccgattttttggatact---aatagtatcgcctttagccttagggatgcagaatcaaattt 8830370  T
Q  216 acacaatggtaagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcact 315  Q
    | ||| |||||||||||| || ||||  |||||||||| |||||||||||| ||||||||||||||||||| |  |||||   ||||||| |||||| ||    
T  8830369 aaacattggtaagtatccggccatggttaaagagtcagttgatattattcattaccttcttgattgtattcgtgatctgcgtaaacatgataccagccct 8830270  T
Q  316 ttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    ||||||  ||||||||||||  || ||| |||||||||||||||| ||||||||||| ||||||||    
T  8830269 ttactcagaaagtatgttgaaaattttcaacaaggtgctcaagtttttcaaattataacaaaatat 8830204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 8834276 - 8833914
Alignment:
Q  16 ggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttgatggatattgctg 115  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||| |||||| | ||| ||||| ||||||||| | | || |||  || |||||||    
T  8834276 ggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataacaattggacccacgcatatgacctaatcagggacatgactgaaattgctg 8834177  T
Q  116 aaaatgatacggcagcaagctattattatcgttgtgattcagattttttggatactgaaaacagtatct-tattaaggcttagggatgcagaattaaatt 214  Q
    | |||||||| | |||| |||||||  |||||||||   | ||||||| |||||||   || |||||   ||||| | |||||||||||| ||| |||||    
T  8834176 agaatgataccgtagcaggctattacgatcgttgtgcaaccgatttttcggatact---aatagtatagctatta-gccttagggatgcaaaatcaaatt 8834081  T
Q  215 tacacaatggtaagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcac 314  Q
    || ||| ||||| |||||| || ||||  |||||||||| |||||||||||| ||||||||||||||||||| |  |||||   ||||||| |||||| |    
T  8834080 taaacattggtatgtatccggccatggttaaagagtcagttgatattattcattaccttcttgattgtattcgtgatctgcgtaaacatgataccagccc 8833981  T
Q  315 tttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    |||||||   ||||||||||   || ||| |||||||||||||||| ||||||||||  ||||||||    
T  8833980 tttactcaggaagtatgttgcaaattttcaacaaggtgctcaagtttttcaaattattacaaaatat 8833914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 381
Target Start/End: Original strand, 8514711 - 8514866
Alignment:
Q  226 aagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaa 325  Q
    ||||||||||| ||||| ||||| |||| |||||||||  ||||| ||||||| |||||| ||||||| || ||| ||||||||||| ||||||||||||    
T  8514711 aagtatccagccatggctaaagattcagctgatattatgaaatacattcttgaatgtattgatagtctacatgaagatgaaaccagccctttactcgcaa 8514810  T
Q  326 agtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    ||||||||||  | |||| |||||||||||||||| ||||||||||| ||||||||    
T  8514811 agtatgttgaaaaccttcaacaaggtgctcaagtttttcaaattataacaaaatat 8514866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 228 - 381
Target Start/End: Original strand, 5083063 - 5083216
Alignment:
Q  228 gtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaaag 327  Q
    |||| |||| ||||| |||||||||| |||||||||  ||||| ||||||| |||||| ||||||| ||  |||||||||||||| ||||||| ||||||    
T  5083063 gtatgcagccatggctaaagagtcagctgatattatgaaatacattcttgaatgtattgatagtcttcataaacatgaaaccagccctttactagcaaag 5083162  T
Q  328 tatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    ||||||||  |||| |||||||||||||||||| ||||||||||  ||||||||    
T  5083163 tatgttgaaaatctacgacaaggtgctcaagtttttcaaattatcacaaaatat 5083216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 381
Target Start/End: Original strand, 8527583 - 8527738
Alignment:
Q  226 aagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaa 325  Q
    ||||||||||| ||||| ||||| |||| |||||||||  ||||| ||||||| |||||| ||||||| ||  ||||| |||||||| ||||||||||||    
T  8527583 aagtatccagccatggctaaagattcagctgatattatgaaatacattcttgaatgtattgatagtctacataaacataaaaccagccctttactcgcaa 8527682  T
Q  326 agtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
      ||||||||  ||||||||||| ||||||||||| ||||||||||  ||||||||    
T  8527683 catatgttgaaaatcttcgacaaagtgctcaagtttttcaaattatcacaaaatat 8527738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 381
Target Start/End: Complemental strand, 8540906 - 8540751
Alignment:
Q  226 aagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaa 325  Q
    ||||||||||| ||||| ||||| |||| |||||||||  ||||| ||||||| |||||| ||||||| ||  ||||| |||||||| ||||||||||||    
T  8540906 aagtatccagccatggctaaagattcagctgatattatgaaatacattcttgaatgtattgatagtctacataaacataaaaccagccctttactcgcaa 8540807  T
Q  326 agtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
      ||||||||  ||||||||||| ||||||||||| ||||||||||  ||||||||    
T  8540806 catatgttgaaaatcttcgacaaagtgctcaagtttttcaaattatcacaaaatat 8540751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 266 - 381
Target Start/End: Complemental strand, 8625253 - 8625138
Alignment:
Q  266 aataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttca 365  Q
    ||||| ||||||| |||| | |||||||  || || ||||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  8625253 aatacattcttgaatgtagtaatagtcttaaacaaaatgaaaccagccctttacttgcaaagtatgttgatcatcttcgacaaggtgttcaagttcttca 8625154  T
Q  366 aattatatcaaaatat 381  Q
    ||||||| ||||||||    
T  8625153 aattataacaaaatat 8625138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 381
Target Start/End: Complemental strand, 8647254 - 8647138
Alignment:
Q  265 caataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttc 364  Q
    ||||||||| ||||||||||| |||||||||   || || |||| ||| |||||||| ||||||||||||||| ||||| |||||||  |||||||||||    
T  8647254 caatacctttttgattgtattgatagtctgcgcaaaaataaaactagccctttactcccaaagtatgttgatgttcttcaacaaggtaatcaagttcttc 8647155  T
Q  365 aaattatatcaaaatat 381  Q
    |||||||| ||||||||    
T  8647154 aaattataacaaaatat 8647138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 381
Target Start/End: Complemental strand, 8507479 - 8507400
Alignment:
Q  302 atgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||  |||||||    
T  8507479 atgaaaccagccctttacttgcaaagaatgttgatgatcttcgacaagatgatcaagttcttcaaattatactaaaatat 8507400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 8540249 - 8540174
Alignment:
Q  306 aaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    |||||||  |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  8540249 aaccagccatttacttgcaaagtatgttgatcatcttcgacaaggtgttcaagttcttcaaattataacaaaatat 8540174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 8549078 - 8549193
Alignment:
Q  266 aataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttca 365  Q
    ||||| ||||||| |||| | |||||||  || || ||||||||||  ||||||| ||||||||||||||| |||||| |||||||| ||||||||||||    
T  8549078 aatacattcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttgcaaagtatgttgatcatcttcaacaaggtgttcaagttcttca 8549177  T
Q  366 aattatatcaaaatat 381  Q
    ||| ||| ||||||||    
T  8549178 aatcataacaaaatat 8549193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 8514495 - 8514638
Alignment:
Q  10 gcaaagggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaa-cttgatggat 108  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||  | || || ||||||| |||||  |||||  |     
T  8514495 gcaaaaggtgtagatcttgttgaccttgcacaatacacaattgatgtgcttaatgataatacttccgacacacttaacctaat-aagaagtttgattcaa 8514593  T
Q  109 attgctgaaaatgatacggcagcaagctattattatcgttgtgat 153  Q
    | ||||||||||  ||||| ||||| ||||||||||| |||||||    
T  8514594 agtgctgaaaattctacggtagcaaactattattatcattgtgat 8514638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 8527367 - 8527510
Alignment:
Q  10 gcaaagggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttgatggata 109  Q
    ||||| |||||||||||||| || ||||||| |||||||||||||||||||||| | ||||||||   | || || |||||||  | || ||| |    |    
T  8527367 gcaaaaggtgtagatcttgtcgaccttgcacgatacacaattgatgtgcttaataataattcgtctgacacacttaacctaatacataatttggttcgaa 8527466  T
Q  110 ttgctgaaaatgatacggcagcaagctattattatcgttgtgat 153  Q
     ||||||||||||||||| ||||| |||||||||||||||||||    
T  8527467 gtgctgaaaatgatacggtagcaaactattattatcgttgtgat 8527510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 8541122 - 8540979
Alignment:
Q  10 gcaaagggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttgatggata 109  Q
    ||||| |||||||||||||| || ||||||| |||||||||||||||||||||| | ||||||||   | || || |||||||  | || ||| |    |    
T  8541122 gcaaaaggtgtagatcttgtcgaccttgcacgatacacaattgatgtgcttaataataattcgtctgacacacttaacctaatacataatttggttcgaa 8541023  T
Q  110 ttgctgaaaatgatacggcagcaagctattattatcgttgtgat 153  Q
     ||||||||||||||||| ||||| |||||||||||||||||||    
T  8541022 gtgctgaaaatgatacggtagcaaactattattatcgttgtgat 8540979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 8630533 - 8630463
Alignment:
Q  302 atgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattata 372  Q
    ||||||||||| ||||||||||||| |||||||||| |||| ||||||||  |||||||||||||| ||||    
T  8630533 atgaaaccagccctttactcgcaaaatatgttgatgttctttgacaaggtcatcaagttcttcaaagtata 8630463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 8647506 - 8647366
Alignment:
Q  10 gcaaagggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttgatggata 109  Q
    ||||| |||||||||||||| || |||||| ||||||||||||||||||||| ||| |||| | ||  | ||| | ||||||| || || |||||  | |    
T  8647506 gcaaaaggtgtagatcttgtcgaccttgcagaatacacaattgatgtgcttagtgagaattggaccaacacatataacctaatcaataaattgattaaca 8647407  T
Q  110 ttgctgaaaatgatacggcagcaagctattattatcgttgt 150  Q
     ||||||||||  || || ||||| ||||||||||||||||    
T  8647406 atgctgaaaatagtatggtagcaaactattattatcgttgt 8647366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 8507740 - 8507687
Alignment:
Q  17 gtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaatt 70  Q
    ||||||||||||||||||||||||||||||||||| | |||||| |||| ||||    
T  8507740 gtgtagatcttgttgatcttgcacaatacacaattaaggtgcttgatgaaaatt 8507687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 8632100 - 8632050
Alignment:
Q  18 tgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaat 69  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  8632100 tgtagatattgttgaccttgcacaatacacaattgatgtgc-taatgacaat 8632050  T

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Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 8639599 - 8639632
Alignment:
Q  35 ttgcacaatacacaattgatgtgcttaatgacaa 68  Q
    ||||||||||||||||||||||||||||||||||    
T  8639599 ttgcacaatacacaattgatgtgcttaatgacaa 8639632  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 8627524 - 8627563
Alignment:
Q  111 tgctgaaaatgatacggcagcaagctattattatcgttgt 150  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  8627524 tgctgaaaatgatacggtagcaaactattattatcgttgt 8627563  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 8504667 - 8504602
Alignment:
Q  3 aggagaagcaaagggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaa 68  Q
    ||||| |||||| || ||||||||| |||| | | ||||| ||||||||||||||||| |||||||    
T  8504667 aggaggagcaaaaggcgtagatcttcttgaccctacacaacacacaattgatgtgcttcatgacaa 8504602  T

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Target: scaffold0155 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 226 - 381
Target Start/End: Original strand, 34583 - 34738
Alignment:
Q  226 aagtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaa 325  Q
    |||||| |||| ||||| ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||||  |||||||||||||| ||||||||||||    
T  34583 aagtattcagccatggctaaagattcagctgatattatgcaataccttcttgaatgtattgatagcctgcataaacatgaaaccagccctttactcgcaa 34682  T
Q  326 agtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  34683 aatatgttgatgatcttcgacaaggtgatcaagttcttcaaattataataaaatat 34738  T

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Target: scaffold0155; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 34376 - 34430
Alignment:
Q  16 ggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaatt 70  Q
    ||||||||||||||| | |||||| | ||||||||||||||||| ||||||||||    
T  34376 ggtgtagatcttgttaaccttgcagagtacacaattgatgtgctcaatgacaatt 34430  T

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Target: scaffold0155; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 25858 - 25753
Alignment:
Q  276 tgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatca 375  Q
    |||||||||| ||||||||||  || |||| || ||| |  |||| |||||| ||||||||  |||||||||| ||| | ||||| |||||||||||||     
T  25858 tgattgtattgatagtctgcataaaaatgatactagcccaatacttgcaaaggatgttgatattcttcgacaaagtggtgaagttattcaaattatatcc 25759  T
Q  376 aaatat 381  Q
    ||||||    
T  25758 aaatat 25753  T

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Target: scaffold0155; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 26104 - 26052
Alignment:
Q  18 tgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaatt 70  Q
    |||||||||||||||||||||| | ||||| |||| |||| |||| |||||||    
T  26104 tgtagatcttgttgatcttgcaaattacactattggtgtggttaaggacaatt 26052  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 381
Target Start/End: Original strand, 4538945 - 4539098
Alignment:
Q  228 gtatccagcaatggcgaaagagtcagatgatattattcaataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaaag 327  Q
    ||||||||| ||||| |||||||| | |||||||||  ||||| |||||||||||||| ||||| |  |  ||||| |||| ||| |||||||| |||      
T  4538945 gtatccagccatggctaaagagtcggctgatattatgaaatacattcttgattgtattgatagtttaaataaacatcaaactagccctttactcacaaca 4539044  T
Q  328 tatgttgatgatcttcgacaaggtgctcaagttcttcaaattatatcaaaatat 381  Q
    ||| ||||  ||||||||||| ||||||||||| ||||||||||  ||||||||    
T  4539045 tatcttgaaaatcttcgacaaagtgctcaagtttttcaaattatcacaaaatat 4539098  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 4538828 - 4538870
Alignment:
Q  111 tgctgaaaatgatacggcagcaagctattattatcgttgtgat 153  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  4538828 tgctgaaaatgatacggtagcaaactattattatcgttgtgat 4538870  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 10779838 - 10779787
Alignment:
Q  19 gtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaatt 70  Q
    |||||||||||| | |||||| | ||||||||||||||||||||| ||||||    
T  10779838 gtagatcttgttcaccttgcatattacacaattgatgtgcttaataacaatt 10779787  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 10973447 - 10973396
Alignment:
Q  19 gtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaatt 70  Q
    |||||||||||| | |||||| | ||||||||||||||||||||| ||||||    
T  10973447 gtagatcttgttcaccttgcatattacacaattgatgtgcttaataacaatt 10973396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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