View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_15 (Length: 395)
Name: NF12580_low_15
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 30142183 - 30141822
Alignment:
| Q |
18 |
tatgtaatgttaaaataaagaagaagagagttgtctaaaagttgcttaaaaatagtt-gtacaaatatatcaattctttttatattcttgatggagaact |
116 |
Q |
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| T |
30142183 |
tatgtaatgttaaaataaagaagaagagaattgtctaaaagttgtttaaaaatagttagtataaatatatcaattctttttatatttttgatggagaact |
30142084 |
T |
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| Q |
117 |
tgtagtgtcaactagagatcttaatttactnnnnnnncaagaaatctttattgttagaactaatgttataaaataaaatagaagctggtaagattaattt |
216 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30142083 |
tgcagtgtcaactagagatcttaatttactaaaaaaacaagaaatctttattgttagaactaatgttataaaataaaatagaagctggtaagattaattt |
30141984 |
T |
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| Q |
217 |
atttttaaaaaatgtgggcattggggttgaattctgattggatcaaggttggtttcaccactaccatatgattattttggaaatgctatgatacatgaaa |
316 |
Q |
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| T |
30141983 |
atttttaaaaaatgtgggcattggggttgaattctgattggatcaaggttggtttcaccaccaccatatgattattttggaaatgctatgatacatgaaa |
30141884 |
T |
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| Q |
317 |
gtcaaggagctattagaagaaggtgggcttggtaaaggtgttttagagatgcaatgaatcag |
378 |
Q |
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| T |
30141883 |
gtcaaggagctattagaagaaggtgggcttggtaaaggtgttttagagatgcaatgaatcag |
30141822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 15195982 - 15196106
Alignment:
| Q |
257 |
gatcaaggttggtttcaccactaccatatgattattttggaaatgctatgata--------------catgaaagtcaaggagctattagaagaaggtgg |
342 |
Q |
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| T |
15195982 |
gatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgg |
15196081 |
T |
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| Q |
343 |
gcttggtaaaggtgttttagagatg |
367 |
Q |
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| T |
15196082 |
gcttggtaaaggttctttagagatg |
15196106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 20712112 - 20712075
Alignment:
| Q |
46 |
agttgtctaaaagttgcttaaaaatagttgtacaaatat |
84 |
Q |
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| T |
20712112 |
agttgtctaaaagttg-ttaaaaatagttgtacaaatat |
20712075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 26627376 - 26627338
Alignment:
| Q |
46 |
agttgtctaaaagttgcttaaaaatagttgtacaaatat |
84 |
Q |
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|||||||||||||||| | |||||||||||||||||||| |
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| T |
26627376 |
agttgtctaaaagttgataaaaaatagttgtacaaatat |
26627338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 25028386 - 25028422
Alignment:
| Q |
48 |
ttgtctaaaagttgcttaaaaatagttgtacaaatat |
84 |
Q |
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| T |
25028386 |
ttgtctaaaagttgttttaaaatagttgtacaaatat |
25028422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 49886806 - 49886839
Alignment:
| Q |
52 |
ctaaaagttgcttaaaaatagttgtacaaatata |
85 |
Q |
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| T |
49886806 |
ctaaaagttgtttaaaaatagttgtacaaatata |
49886839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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