View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_low_16 (Length: 395)
Name: NF12580_low_16
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 30343362 - 30343578
Alignment:
| Q |
11 |
aaggttacaaccattcaggaacctaaagatctnnnnnnnttgggattggagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatg |
110 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
30343362 |
aaggttacaaccattcgggaacttaaagatctaaaaaaattgggattggagtccctaattagcaacctgatgagtcacgtgttaaagctgaatcatgatg |
30343461 |
T |
|
| Q |
111 |
aggctaaacctaaagccatgtctataacactcagatccaatggcaaaacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343462 |
aggctaaacctaaagccatgtctataacactcagatccaatggcaaaacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaaga |
30343561 |
T |
|
| Q |
211 |
tgttgagctctctgatg |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30343562 |
tgttgagctctctgatg |
30343578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 30347428 - 30347553
Alignment:
| Q |
170 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatgatgataacttgctttcctcactagaaaagttaaacaactatg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30347428 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatgatgataactggctttcctcactagaaaagttaaacaactatg |
30347527 |
T |
|
| Q |
270 |
catggattttactttcattctaggta |
295 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30347528 |
catggattttactttcattctaggta |
30347553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 28560515 - 28560689
Alignment:
| Q |
59 |
gagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatgaggctaaacctaaagccatgtctataacactcagatccaat-ggcaaa |
157 |
Q |
| |
|
|||||||| ||||||| || | ||||||| | || ||| ||||||||||||| | ||||||||||| || |||||||||||||| |||||| |||||| |
|
|
| T |
28560515 |
gagtcccttattagcagcccggtgagtcatgagttagagttgaatcatgatgatgataaacctaaagtcaagtctataacactcaaatccaaaaggcaaa |
28560614 |
T |
|
| Q |
158 |
acggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatgatgat |
232 |
Q |
| |
|
| ||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
28560615 |
atggtgaaagctctgcaggctaaagatgaagctctataggaagctgatgaagatgttgaggtatctggtgatgat |
28560689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 23212970 - 23213087
Alignment:
| Q |
101 |
aatcatgatgaggctaaacctaaagccatgtctataacactcagatccaatggcaaaac-ggtgaaagctctgcaagctgaagatgaagctccagaggaa |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||| ||| |||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
23212970 |
aatcatgatgaggctaaacctaaatccaagtctataatgctcaaatccaaaggcaaaaatggtcaaaggtctgcaggctgaagatgaagctccaaaggaa |
23213069 |
T |
|
| Q |
200 |
gctgatgaagatgttgag |
217 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
23213070 |
gctaatgaagatgttgag |
23213087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University