View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_17 (Length: 394)
Name: NF12580_low_17
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 27846723 - 27847093
Alignment:
| Q |
7 |
tcaatgaggtggacatcaagaaaagatatagattatattggaattgaaataataacaaaatattgcttatctcataacaaggtagtgctaacaaacataa |
106 |
Q |
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| T |
27846723 |
tcaattaggaggaaattaagaaaagatatagattatattggaattgaaataataacaaaatattgctcatctcgtaataaggtagtgctaacaaacataa |
27846822 |
T |
|
| Q |
107 |
cataacaccagtttctactataatctctcaacaactacgaaaaagaaagttacatagacattaactttggtccattatctggcattcccatccctccagc |
206 |
Q |
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| T |
27846823 |
cataacaccagtttctactataatctctcaacagctacgaaaaagaaagttacatagacattaactttggtccattatctggcattcccatccctccagc |
27846922 |
T |
|
| Q |
207 |
taaatcagcatcaagttgagtgtgtggtgcgtcacccatcatttgtttcacactgcacaaacaaacagcaatatcagaagcaatcacatgtctaatcatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27846923 |
taaatcagcatcaagttgagtgtgtggtgcgtcacccatcatttgtttcacactgcacaaacaaacagcaatatcagaagcaatcacatgtctaatcatg |
27847022 |
T |
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| Q |
307 |
cttgaagctcaatctgcaatttgcattgatgcaaatcctttgatgaaaggctatactctaaataagagctt |
377 |
Q |
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| T |
27847023 |
cttgaagctcaatttgcaatttgcattgatgcaaatcctttaatgaaaggctatactctaaataagagctt |
27847093 |
T |
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