View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12580_low_18 (Length: 388)

Name: NF12580_low_18
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12580_low_18
NF12580_low_18
[»] chr8 (14 HSPs)
chr8 (142-341)||(36589447-36589646)
chr8 (19-150)||(36588090-36588221)
chr8 (38-87)||(3757972-3758021)
chr8 (41-78)||(11754259-11754296)
chr8 (38-90)||(44293569-44293621)
chr8 (40-90)||(1230678-1230728)
chr8 (44-90)||(37015857-37015903)
chr8 (45-90)||(1092281-1092325)
chr8 (45-90)||(8687860-8687905)
chr8 (45-90)||(14303159-14303204)
chr8 (38-87)||(26885653-26885702)
chr8 (45-90)||(33445564-33445609)
chr8 (38-90)||(13286125-13286177)
chr8 (40-84)||(42932245-42932289)
[»] chr1 (19 HSPs)
chr1 (40-90)||(3528486-3528536)
chr1 (40-91)||(44243866-44243917)
chr1 (40-91)||(36371057-36371108)
chr1 (36-90)||(11014226-11014280)
chr1 (38-90)||(14905431-14905483)
chr1 (45-89)||(23772299-23772343)
chr1 (38-90)||(34632163-34632215)
chr1 (38-90)||(44365963-44366015)
chr1 (41-85)||(49242196-49242240)
chr1 (31-90)||(30678821-30678880)
chr1 (38-85)||(32969662-32969709)
chr1 (44-90)||(7925358-7925404)
chr1 (37-87)||(8153132-8153182)
chr1 (44-90)||(30795695-30795741)
chr1 (40-73)||(4806812-4806845)
chr1 (41-90)||(5182663-5182712)
chr1 (41-90)||(41573287-41573336)
chr1 (44-92)||(26803472-26803520)
chr1 (38-78)||(29741949-29741989)
[»] chr7 (24 HSPs)
chr7 (35-90)||(22267575-22267630)
chr7 (37-87)||(3883084-3883134)
chr7 (36-74)||(23172410-23172448)
chr7 (46-90)||(4098642-4098686)
chr7 (38-89)||(9819564-9819615)
chr7 (38-89)||(10721489-10721540)
chr7 (36-71)||(41619408-41619443)
chr7 (44-91)||(46185194-46185241)
chr7 (40-90)||(16355507-16355557)
chr7 (40-90)||(16970990-16971040)
chr7 (40-90)||(21099790-21099840)
chr7 (44-90)||(29734811-29734857)
chr7 (44-90)||(32062017-32062063)
chr7 (44-90)||(36032926-36032972)
chr7 (40-90)||(38553812-38553862)
chr7 (40-90)||(48289024-48289074)
chr7 (38-87)||(31885960-31886009)
chr7 (45-90)||(32263001-32263046)
chr7 (45-90)||(36803832-36803877)
chr7 (44-84)||(3196663-3196703)
chr7 (38-90)||(8683064-8683116)
chr7 (39-79)||(10555359-10555399)
chr7 (37-89)||(19815727-19815779)
chr7 (36-88)||(25246767-25246819)
[»] chr5 (16 HSPs)
chr5 (35-90)||(12909178-12909233)
chr5 (22-90)||(27155196-27155264)
chr5 (45-90)||(28391653-28391698)
chr5 (39-87)||(7671228-7671276)
chr5 (19-74)||(12159396-12159452)
chr5 (19-87)||(32622892-32622960)
chr5 (44-91)||(18538601-18538648)
chr5 (40-90)||(24160521-24160571)
chr5 (44-90)||(27721696-27721742)
chr5 (44-78)||(29962364-29962398)
chr5 (44-78)||(30012400-30012434)
chr5 (41-79)||(40955513-40955551)
chr5 (45-87)||(43359095-43359137)
chr5 (37-90)||(689541-689594)
chr5 (44-89)||(17861974-17862019)
chr5 (36-88)||(17230382-17230434)
[»] chr3 (13 HSPs)
chr3 (40-89)||(25289330-25289379)
chr3 (44-90)||(33223862-33223908)
chr3 (44-91)||(2105719-2105766)
chr3 (44-78)||(6901475-6901509)
chr3 (44-90)||(8174264-8174310)
chr3 (45-87)||(45669640-45669682)
chr3 (40-86)||(20624240-20624288)
chr3 (41-90)||(32632315-32632364)
chr3 (45-90)||(48924341-48924386)
chr3 (41-90)||(53852729-53852778)
chr3 (19-90)||(16980349-16980421)
chr3 (31-87)||(32651641-32651697)
chr3 (41-81)||(35208855-35208895)
[»] chr6 (7 HSPs)
chr6 (19-90)||(866280-866352)
chr6 (38-90)||(7281413-7281465)
chr6 (40-90)||(2105899-2105949)
chr6 (40-90)||(8138475-8138525)
chr6 (44-90)||(34701141-34701187)
chr6 (36-89)||(5632129-5632182)
chr6 (44-85)||(6555536-6555577)
[»] chr4 (25 HSPs)
chr4 (22-90)||(44383442-44383510)
chr4 (37-91)||(4916148-4916202)
chr4 (40-90)||(22164286-22164336)
chr4 (36-90)||(36720672-36720726)
chr4 (38-87)||(3047200-3047249)
chr4 (44-89)||(10069109-10069154)
chr4 (21-81)||(43924913-43924974)
chr4 (38-90)||(8494981-8495033)
chr4 (38-85)||(18004464-18004511)
chr4 (38-89)||(45970722-45970773)
chr4 (40-87)||(54500566-54500613)
chr4 (40-90)||(5185122-5185172)
chr4 (36-90)||(23225859-23225913)
chr4 (44-90)||(31041386-31041432)
chr4 (40-78)||(34942428-34942466)
chr4 (41-91)||(43173313-43173363)
chr4 (40-86)||(47266150-47266196)
chr4 (40-74)||(52936651-52936685)
chr4 (38-90)||(12671763-12671815)
chr4 (42-90)||(23171005-23171053)
chr4 (45-89)||(23626376-23626420)
chr4 (44-92)||(27594319-27594367)
chr4 (41-89)||(32006495-32006543)
chr4 (19-74)||(48171891-48171947)
chr4 (41-85)||(49488561-49488605)
[»] scaffold0045 (2 HSPs)
scaffold0045 (45-91)||(63855-63901)
scaffold0045 (45-91)||(71187-71233)
[»] chr2 (24 HSPs)
chr2 (40-89)||(20517017-20517066)
chr2 (45-90)||(30243244-30243289)
chr2 (35-87)||(8043973-8044025)
chr2 (19-90)||(3197075-3197146)
chr2 (38-85)||(20644003-20644050)
chr2 (38-81)||(45256153-45256196)
chr2 (44-90)||(690782-690828)
chr2 (44-90)||(7206119-7206165)
chr2 (44-90)||(9686451-9686497)
chr2 (44-86)||(13490723-13490765)
chr2 (44-90)||(18782561-18782607)
chr2 (44-90)||(24592867-24592913)
chr2 (44-90)||(26999104-26999150)
chr2 (44-90)||(37984349-37984395)
chr2 (41-78)||(8727724-8727761)
chr2 (45-90)||(30089043-30089088)
chr2 (45-90)||(30125647-30125692)
chr2 (40-73)||(30799105-30799138)
chr2 (38-90)||(2783001-2783053)
chr2 (38-90)||(7029406-7029458)
chr2 (38-90)||(11043805-11043857)
chr2 (38-90)||(17736787-17736839)
chr2 (40-88)||(27412853-27412901)
chr2 (44-84)||(37670502-37670542)
[»] scaffold0027 (1 HSPs)
scaffold0027 (40-87)||(42722-42769)
[»] scaffold0083 (1 HSPs)
scaffold0083 (38-90)||(45937-45989)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 142 - 341
Target Start/End: Original strand, 36589447 - 36589646
Alignment:
Q  142 tttttaaaaatttcatagtgcaaagtttgacgggactagaacccatgctaatttttgtttaggagggaaattgcaggggaaagcatccaagatagtggca 241  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  36589447 tttttaaaaatttcatagtgcaaagtttgacgagactagaacccatgctaatttttgtttaggagggaaattgcaggggaaaacatccaagataatggca 36589546  T
Q  242 ggatttactccgatttgcgtacgtaagtgcttttgacaaagtttttgtataaggcagggatagtataaaagataaagatatgtcctttaaaattttctca 341  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36589547 ggatttactccgatttgcgtacataagtgcttttgacaaagtttttgaataaggcagggatagtataaaagataaagatatgtcctttacaattttctca 36589646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 36588090 - 36588221
Alignment:
Q  19 ggtcggggtttgaccatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggacccgcaaacatgattttatcaaaataatc 118  Q
    ||||||||||||| || ||| |||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||||||| |||| ||||||||||    
T  36588090 ggtcggggtttgatcacgaaccttacatatattatacattgttcctaccaactgagctaagttcacgatgatccgcaaacatgactttaccaaaataatc 36588189  T
Q  119 aaggtgtacatatacaaacaccatttttaaaa 150  Q
    ||||||||||||||||||||||||||||||||    
T  36588190 aaggtgtacatatacaaacaccatttttaaaa 36588221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 3757972 - 3758021
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||| |||||    
T  3757972 atcttacatatattatgcattgttcctatcaactgagctaaatttacgag 3758021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 11754296 - 11754259
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaa 78  Q
    |||||||||||||||||||||||||| |||||||||||    
T  11754296 ttacatatattatacattgtttctactaactgagctaa 11754259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 44293621 - 44293569
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||||| |||||| | |||||||||||||||  ||||||||||    
T  44293621 atcttacatatattatgcattgtctataccaactgagctaagctcacgaggac 44293569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 1230678 - 1230728
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||| ||||||| |||||||||||| |||| || |||||||    
T  1230678 cttacatatattatgcattgttcctaccaactgagttaaactcgcgaggac 1230728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 37015857 - 37015903
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| |||||| |||||||||||||||||  ||||||||||    
T  37015857 catatattatgcattgtctctaccaactgagctaagctcacgaggac 37015903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 1092281 - 1092325
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  1092281 atatattatgcattgtt-ctaccaactgaactaaattcacgaggac 1092325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 8687905 - 8687860
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||  ||||||| |||| |||||||||||||||    
T  8687905 atatattatacattgtccctaccaattgagttaaattcacgaggac 8687860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 14303204 - 14303159
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||   |||||||||||||||| ||||||||||    
T  14303204 atatattatacattgtccataccaactgagctaaactcacgaggac 14303159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 26885653 - 26885702
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    ||||||||||| |||| |||||||  |||||||||||||||| |||||||    
T  26885653 atcttacatattttatgcattgttcataccaactgagctaaactcacgag 26885702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 33445609 - 33445564
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||| ||||||| ||||||||||||||||  ||||||||||    
T  33445609 atatattatgcattgttcctaccaactgagctaagctcacgaggac 33445564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 13286177 - 13286125
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| |||||||||| |||||| | |||||||||||||||  ||||||||||    
T  13286177 atcttgcatatattatgcattgtctataccaactgagctaagctcacgaggac 13286125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 42932245 - 42932289
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcac 84  Q
    ||||||||||||||||||||||| |||||| ||| ||||| ||||    
T  42932245 cttacatatattatacattgtttataccaagtgaactaaactcac 42932289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 3528486 - 3528536
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  3528486 cttacatatattatacattgtttctatcaactgagctaaactcacgaggac 3528536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 44243917 - 44243866
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  44243917 cttacatatattatgcattgttcctaccaactgagctaaactcacgaggacc 44243866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 36371057 - 36371108
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    |||||||||||||| |||||| |||||||||||||||||  |||||||||||    
T  36371057 cttacatatattatgcattgtctctaccaactgagctaagctcacgaggacc 36371108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 11014280 - 11014226
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||| |||||||||| || ||| |||||||||||||||||| ||||||||||    
T  11014280 gaatcttgcatatattatgcactgtctctaccaactgagctaaactcacgaggac 11014226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 14905431 - 14905483
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||||   ||||||||||||||||||| |||| ||||||||||    
T  14905431 atcttacatatattaagtattgtttctaccaactgagttaaactcacgaggac 14905483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 23772299 - 23772343
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||    
T  23772299 atatattatacattgttcctacaaactgaactaaattcacgagga 23772343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 34632215 - 34632163
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| ||||||||||||||||| | |||||||||||||||  ||||||||||    
T  34632215 atcttgcatatattatacattgtctataccaactgagctaagctcacgaggac 34632163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 44365963 - 44366015
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||  |||||| |||||||||||| |||| ||||||||||    
T  44365963 atcttacatatattatgtattgttcctaccaactgagttaaactcacgaggac 44366015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 49242240 - 49242196
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacg 85  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||    
T  49242240 ttacatatattatacattgtctctaccaactaagctaaactcacg 49242196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 30678821 - 30678880
Alignment:
Q  31 accatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||| |||||||||||||| ||||||  |||||||||||| |||  ||||||||||    
T  30678821 accatgaaccttacatatattatgcattgtccctaccaactgagttaagctcacgaggac 30678880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 32969662 - 32969709
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacg 85  Q
    ||||||||||||||||| ||||||| || ||||||| |||||||||||    
T  32969662 atcttacatatattatatattgtttttatcaactgacctaaattcacg 32969709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 7925404 - 7925358
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| |||||| |||||||||||||||||  ||||||||||    
T  7925404 catatattatgcattgtctctaccaactgagctaagctcacgaggac 7925358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 8153182 - 8153132
Alignment:
Q  37 aatcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    ||||||||||||||||| |||||| | ||||||||||| |||| |||||||    
T  8153182 aatcttacatatattatgcattgtctataccaactgagttaaactcacgag 8153132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 30795741 - 30795695
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| |||||||  ||||||||||||||| |||||||||||    
T  30795741 catatattatgcattgttcttaccaactgagctaagttcacgaggac 30795695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 4806812 - 4806845
Alignment:
Q  40 cttacatatattatacattgtttctaccaactga 73  Q
    ||||||||||||||||||||| ||||||||||||    
T  4806812 cttacatatattatacattgtctctaccaactga 4806845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 5182663 - 5182712
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||  |||||||||||||||||| |||| |||| ||||||    
T  5182663 ttacatatattatgtattgtttctaccaactgaactaatttcatgaggac 5182712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 41573287 - 41573336
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||| ||||||  |||||||||||| |||| ||||||||||    
T  41573287 ttacatatattatgcattgtccctaccaactgagttaaactcacgaggac 41573336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 26803472 - 26803520
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggaccc 92  Q
    |||||||||| ||||||   ||||||||||||||| |||||||||||||    
T  26803472 catatattatgcattgtccataccaactgagctaagttcacgaggaccc 26803520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 29741949 - 29741989
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaa 78  Q
    |||||||||||||||| | |||| |||||||||||||||||    
T  29741949 atcttacatatattatgcgttgtatctaccaactgagctaa 29741989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 22267630 - 22267575
Alignment:
Q  35 tgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||    
T  22267630 tgaatcttacatatattatgcattgtctctaccaactgagttaaactcacgaggac 22267575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 3883084 - 3883134
Alignment:
Q  37 aatcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||    
T  3883084 aatcttgcatatatcatacattgtttctaccaactgaggtaagttcacgag 3883134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 23172448 - 23172410
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaactgag 74  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  23172448 gaatcttacatatattatacattgttcctaccaactgag 23172410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 4098642 - 4098686
Alignment:
Q  46 tatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||    
T  4098642 tatattatatattgttcctaccaactgagctaaactcacgaggac 4098686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 9819564 - 9819615
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||| |||||||||| ||||||| |||||||||||| |||| |||||||||    
T  9819564 atcttgcatatattatgcattgttcctaccaactgagataaactcacgagga 9819615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 10721489 - 10721540
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||| |||||||||| ||||||| |||||||||||| |||| |||||||||    
T  10721489 atcttgcatatattatgcattgttcctaccaactgagataaactcacgagga 10721540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 41619408 - 41619443
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaact 71  Q
    |||||||||||||||||||||||||| |||||||||    
T  41619408 gaatcttacatatattatacattgttcctaccaact 41619443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 46185194 - 46185241
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    ||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  46185194 catattttatgcattgttcctaccaattgagctaaattcacgaggacc 46185241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 16355557 - 16355507
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||| ||| ||||||||||||| |||  ||||||||||    
T  16355557 cttacatatattatacaatgtctctaccaactgagttaagctcacgaggac 16355507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 16971040 - 16970990
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||||||||   |||||||||||| || ||||||||||    
T  16971040 cttacatatattatacattgttctaaccaactgagcttaactcacgaggac 16970990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 21099790 - 21099840
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||| ||||||||| ||||||   |||||||||||||||||||||||||||    
T  21099790 cttatatatattatgcattgtccataccaactgagctaaattcacgaggac 21099840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 29734811 - 29734857
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| ||||||||||| | ||||||||||| ||||||||||    
T  29734811 catatattatgcattgtttctatcgactgagctaaactcacgaggac 29734857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 32062063 - 32062017
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||| ||||||||||||| |||  ||||||||||    
T  32062063 catatattatacattgtctctaccaactgagttaatctcacgaggac 32062017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 36032972 - 36032926
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||||||| |||||||| ||| |||| ||||||||||    
T  36032972 catatattatacattgttactaccaaccgagttaaactcacgaggac 36032926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 38553862 - 38553812
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||| |||||||  ||||||||||||||| |||||| ||||    
T  38553862 cttacatatattatgcattgttcttaccaactgagctaagttcacggggac 38553812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 48289074 - 48289024
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||||| |||| |||||||||| |||  ||||||||||    
T  48289074 cttacatatattatacattatttccaccaactgagttaagctcacgaggac 48289024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 31885960 - 31886009
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||||||||||| |||||||  |||||||||| ||||| |||||||    
T  31885960 atcttacatatattatgcattgttcataccaactgaactaaactcacgag 31886009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 32263046 - 32263001
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||||| | |||||||||||||||  ||||||||||    
T  32263046 atatattatacattgtctataccaactgagctaagctcacgaggac 32263001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 36803877 - 36803832
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||| |||||| |||||||||||||||||  ||||||||||    
T  36803877 atatattatgcattgtctctaccaactgagctaagctcacgaggac 36803832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 3196663 - 3196703
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcac 84  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  3196663 catatattatacattgtctttaccaactgagctaaactcac 3196703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 8683116 - 8683064
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| |||||||||| |||||| | |||||||||||||||  ||||||||||    
T  8683116 atcttgcatatattatgcattgtctataccaactgagctaagctcacgaggac 8683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 10555359 - 10555399
Alignment:
Q  39 tcttacatatattatacattgtttctaccaactgagctaaa 79  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  10555359 tcttgcatatattatacattgttcataccaactgagctaaa 10555399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 19815779 - 19815727
Alignment:
Q  37 aatcttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||||| ||||||||| |||| |||||||||| |||  ||||||||||||||    
T  19815779 aatcttatatatattatgcattttttctaccaattgaattaaattcacgagga 19815727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 25246819 - 25246767
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaactgagctaaattcacgagg 88  Q
    ||||||| |||||||||| |||||| | || ||||||||||||| ||||||||    
T  25246819 gaatcttgcatatattatgcattgtctttatcaactgagctaaactcacgagg 25246767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 12909178 - 12909233
Alignment:
Q  35 tgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||| |||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  12909178 tgaaccttacatatattatgcattgttcataccaactgagctaaattcacgaggac 12909233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 27155264 - 27155196
Alignment:
Q  22 cggggtttgaccatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| | ||||||||||||||||||| |||||| ||||||  |||||||||  ||||||||||    
T  27155264 cggggtttgaacttgaatcttacatatattatgcattgtctctacccgctgagctaagctcacgaggac 27155196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 28391653 - 28391698
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  28391653 atatattatacattatttctatcaactgagctaaactcacgaggac 28391698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 7671276 - 7671228
Alignment:
Q  39 tcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||||| |||||||||||||||| |||||||| |||| |||||||    
T  7671276 tcttacatatcttatacattgtttctatcaactgagttaaactcacgag 7671228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 12159396 - 12159452
Alignment:
Q  19 ggtcggggtttgac-catgaatcttacatatattatacattgtttctaccaactgag 74  Q
    |||||||||||||  | |||| ||||||||||||||||||||| |||||||||||||    
T  12159396 ggtcggggtttgaatcctgaaccttacatatattatacattgtctctaccaactgag 12159452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 32622960 - 32622892
Alignment:
Q  19 ggtcggggtttgaccatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||||| || | |||| ||| ||||| |||||||||||   ||||||||||||||||||||||||    
T  32622960 ggtcggggttcgaacctgaaccttgcatattttatacattgtccataccaactgagctaaattcacgag 32622892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 18538648 - 18538601
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    |||||||||| |||||| |||||||||| ||||||| |||||||||||    
T  18538648 catatattatgcattgtctctaccaacttagctaaactcacgaggacc 18538601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 24160571 - 24160521
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||| |||||   ||||||| |||||||||||||||||||    
T  24160571 cttacatatattatagattgtccttaccaaccgagctaaattcacgaggac 24160521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 27721696 - 27721742
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| ||||||| ||||||||||||||||  ||||||||||    
T  27721696 catatattatgcattgttcctaccaactgagctaagctcacgaggac 27721742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 29962398 - 29962364
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaa 78  Q
    |||||||||||||||||||||| ||||||||||||    
T  29962398 catatattatacattgtttctatcaactgagctaa 29962364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 30012400 - 30012434
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaa 78  Q
    |||||||||||||||||||||| ||||||||||||    
T  30012400 catatattatacattgtttctatcaactgagctaa 30012434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 40955513 - 40955551
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaa 79  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  40955513 ttacatatattatacattgttcctactaactgagctaaa 40955551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 43359095 - 43359137
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    ||||||||||||||||||||||||||| | |||| ||||||||    
T  43359095 atatattatacattgtttctaccaactaaactaagttcacgag 43359137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 689594 - 689541
Alignment:
Q  37 aatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||||||||||   || |||||||| ||| |||||||||||    
T  689594 aatcttacatatattatacattgtccatatcaactgagttaagttcacgaggac 689541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 17862019 - 17861974
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    |||||||||| ||||||  ||||||||||||||||| |||||||||    
T  17862019 catatattatgcattgtccctaccaactgagctaaactcacgagga 17861974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 17230434 - 17230382
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaactgagctaaattcacgagg 88  Q
    |||||||||||||||||| |||||| |||  ||||||||||||  ||||||||    
T  17230434 gaatcttacatatattatgcattgtctctgtcaactgagctaagatcacgagg 17230382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 25289330 - 25289379
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  25289330 cttacatatattatacattgtttttaccaactgagctaagttcacaagga 25289379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 33223908 - 33223862
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||    
T  33223908 catatattatgcattgtttctaccaactgagctaagctcacgaggac 33223862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 2105719 - 2105766
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    ||||||||||||||| ||| ||||||||||| ||| ||||||||||||    
T  2105719 catatattatacattatttttaccaactgagttaagttcacgaggacc 2105766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 6901475 - 6901509
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaa 78  Q
    |||||||||||||||||| ||||||||||||||||    
T  6901475 catatattatacattgttcctaccaactgagctaa 6901509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 8174310 - 8174264
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||| ||||| |||||||||||||||||| | ||||||||    
T  8174310 catatattatatattgtctctaccaactgagctaaacttacgaggac 8174264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 45669640 - 45669682
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    ||||||||||||||||||||||||| |||| |||| |||||||    
T  45669640 atatattatacattgtttctaccaattgagttaaactcacgag 45669682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 20624288 - 20624240
Alignment:
Q  40 cttacatatattata--cattgtttctaccaactgagctaaattcacga 86  Q
    |||||||||||||||  ||||||| |||||||||||| |||||||||||    
T  20624288 cttacatatattatatgcattgttcctaccaactgagataaattcacga 20624240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 32632364 - 32632315
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||| |||||||| |||||||||||| ||  ||||||||||    
T  32632364 ttacatatattatgcattgtttataccaactgagcaaagctcacgaggac 32632315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 48924341 - 48924386
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||  ||||||||| ||||||| ||||||||||    
T  48924341 atatattatacattgtccctaccaactaagctaaactcacgaggac 48924386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 53852778 - 53852729
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||| |||||||| | |||||||||||||| | ||||||||    
T  53852778 ttacatatattatgcattgtttatgccaactgagctaaacttacgaggac 53852729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 16980349 - 16980421
Alignment:
Q  19 ggtcggggtttga-ccatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||| ||||| ||||||| ||| |||||||||| ||||||   |||||||||||||||  ||||||||||    
T  16980349 ggtcgggatttgaaccatgaaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggac 16980421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 32651697 - 32651641
Alignment:
Q  31 accatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||| ||| |||||||||||| || |||||| |||||||| ||| ||||||||    
T  32651697 accatgaaccttgcatatattatacgttatttctatcaactgagttaagttcacgag 32651641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 35208855 - 35208895
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaatt 81  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  35208855 ttacatatattatacattattcttaccaactgagctaaatt 35208895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 866280 - 866352
Alignment:
Q  19 ggtcggggtttga-ccatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||| ||||||| ||| |||||||||| ||| ||  ||||||||||||||||| ||||||||||    
T  866280 ggtcggggtttgaaccatgaaccttgcatatattatgcatcgtgcctaccaactgagctaaactcacgaggac 866352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 7281413 - 7281465
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||    
T  7281413 atcttacatatattatacattgtctctaccaaccgagttaaactcacgaggac 7281465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 2105949 - 2105899
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||| |||||||| ||||||| |||||||| ||||||||||    
T  2105949 cttacatatattatgcattgtttttaccaaccgagctaaactcacgaggac 2105899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 8138475 - 8138525
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||| |||||||  || ||||||||||||||||||||||||    
T  8138475 cttacatatattatgcattgttcttatcaactgagctaaattcacgaggac 8138525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 34701187 - 34701141
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  34701187 catatattatgcattgttcctaccaactgaactaagttcacgaggac 34701141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 5632182 - 5632129
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    |||||||| ||||||||||||||||| ||||||| |||| |||  |||||||||    
T  5632182 gaatcttatatatattatacattgttcctaccaattgagttaagctcacgagga 5632129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 6555536 - 6555577
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacg 85  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  6555536 catatattatacattgtccctaccaactgagctaagttcacg 6555577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 44383510 - 44383442
Alignment:
Q  22 cggggtttgaccatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| | || | ||||||||| ||||| ||||||| ||||||||||||||| |||||||||||    
T  44383510 cggggtttgaacctggaccttacatattttatatattgtttataccaactgagctaagttcacgaggac 44383442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 4916202 - 4916148
Alignment:
Q  37 aatcttacatatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    ||||||||||||||||| |||||||   |||||||||||||| ||||||||||||    
T  4916202 aatcttacatatattatgcattgttcaaaccaactgagctaagttcacgaggacc 4916148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 22164286 - 22164336
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||| ||||||| ||||||||| ||||||| ||||||||||    
T  22164286 cttacatatattatgcattgttcctaccaactaagctaaactcacgaggac 22164336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 36720726 - 36720672
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||| |||||||||||||||||| ||||||| |||| ||| |||||||||||    
T  36720726 gaatcttgcatatattatacattgttcctaccaattgagttaagttcacgaggac 36720672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 3047249 - 3047200
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||||||||||||| ||||| ||||||||||||||||  |||||||    
T  3047249 atcttacatatattatacgttgttcctaccaactgagctaagctcacgag 3047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 10069109 - 10069154
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||    
T  10069109 catatattatacattgttcataccaactgagctaagttcacgagga 10069154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 43924913 - 43924974
Alignment:
Q  21 tcggggtttga-ccatgaatcttacatatattatacattgtttctaccaactgagctaaatt 81  Q
    ||||||||||| ||| |||||||||||||| ||| ||||||  |||||||||||||||||||    
T  43924913 tcggggtttgaaccacgaatcttacatatactatgcattgtacctaccaactgagctaaatt 43924974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 8495033 - 8494981
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| |||||||||| ||||||  |||||||||||||||| |||||||||||    
T  8495033 atcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggac 8494981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 18004511 - 18004464
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacg 85  Q
    |||||||||||||||| |||| ||  ||||||||||||||||||||||    
T  18004511 atcttacatatattatgcattattcttaccaactgagctaaattcacg 18004464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 45970722 - 45970773
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||| |||||||||| |||||||||||||||||||| |||  |||||||||    
T  45970722 atcttgcatatattatgcattgtttctaccaactgagttaagctcacgagga 45970773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 54500613 - 54500566
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||||||||| |||||| |||||||||||||||||  |||||||    
T  54500613 cttacatatattatgcattgtctctaccaactgagctaagctcacgag 54500566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 5185172 - 5185122
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||||| | | ||||||||||| |||| ||||||||||    
T  5185172 cttacatatattatacattatctataccaactgagttaaactcacgaggac 5185122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 23225913 - 23225859
Alignment:
Q  36 gaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||| ||||||||||  |||||| |||||||||||| ||| |||||||||||    
T  23225913 gaatcttgcatatattatgaattgttcctaccaactgagttaagttcacgaggac 23225859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 31041386 - 31041432
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||||||||||||||| |||| |||  ||||||||||    
T  31041386 catatattatacattgtttctaccaaatgagttaagctcacgaggac 31041432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 34942428 - 34942466
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaa 78  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  34942428 cttacatatattatacattgtctctaccaactgaactaa 34942466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 43173313 - 43173363
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    |||||||||||||| ||| |||||||||| |||||||| ||||||| ||||    
T  43173313 ttacatatattatatattttttctaccaattgagctaagttcacgatgacc 43173363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 47266196 - 47266150
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacga 86  Q
    ||||||||||||||||||||| | |||||||||| ||||| ||||||    
T  47266196 cttacatatattatacattgtctataccaactgatctaaactcacga 47266150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 52936685 - 52936651
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgag 74  Q
    |||||||||||||||||||||||||| ||||||||    
T  52936685 cttacatatattatacattgtttctatcaactgag 52936651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 12671763 - 12671815
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| ||||| |||| |||||| | |||||||||||||||| ||||||||||    
T  12671763 atcttgcatattttatgcattgtctataccaactgagctaaactcacgaggac 12671815  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 23171053 - 23171005
Alignment:
Q  42 tacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||||||||| ||| |||||||| |||  ||||||||||    
T  23171053 tacatatattatacattgttcctaacaactgagttaagctcacgaggac 23171005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 23626420 - 23626376
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    |||||||||||||||| | ||||||||||| |||| |||||||||    
T  23626420 atatattatacattgtctataccaactgagttaaactcacgagga 23626376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 27594367 - 27594319
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggaccc 92  Q
    ||||| ||||| |||||| | |||||||||||||| |||||||||||||    
T  27594367 catattttatatattgttccaaccaactgagctaagttcacgaggaccc 27594319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 32006543 - 32006495
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    ||||||||||||| |||| |  ||||||||||||||||| |||||||||    
T  32006543 ttacatatattatgcattatccctaccaactgagctaaactcacgagga 32006495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 48171947 - 48171891
Alignment:
Q  19 ggtcggggtttgaccat-gaatcttacatatattatacattgtttctaccaactgag 74  Q
    ||||||||||||| | | ||| ||| ||||||||||||||||| |||||||||||||    
T  48171947 ggtcggggtttgaacctagaaccttgcatatattatacattgtctctaccaactgag 48171891  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 49488561 - 49488605
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaaattcacg 85  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||||    
T  49488561 ttacatataatatacattatttctaccaactgaactaaactcacg 49488605  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 63901 - 63855
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||    
T  63901 atatattatacattgtccctaccaactgagctaaactcacgaggacc 63855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 71233 - 71187
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggacc 91  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||    
T  71233 atatattatacattgtccctaccaactgagctaaactcacgaggacc 71187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 20517066 - 20517017
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgagga 89  Q
    |||||||||||||| |||||||  |||||||||||||||| |||||||||    
T  20517066 cttacatatattatgcattgttcttaccaactgagctaaactcacgagga 20517017  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 30243289 - 30243244
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||||    
T  30243289 atatattatgcattgtctctaccaactgagctaagttcacgaggac 30243244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 8044025 - 8043973
Alignment:
Q  35 tgaatcttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    |||||||||| ||||||||| ||||| |||| |||||||||||| ||||||||    
T  8044025 tgaatcttacgtatattatatattgtctctatcaactgagctaagttcacgag 8043973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 3197075 - 3197146
Alignment:
Q  19 ggtcggggtttgaccatgaatcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||||||    ||| ||| |||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  3197075 ggtcggggtttgaatccgaaccttgcatatattatgcattgtccctaccaactgagctaaactcacgaggac 3197146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 20644050 - 20644003
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacg 85  Q
    |||||||||||||||| |||| ||  ||||||||||||||||||||||    
T  20644050 atcttacatatattatgcattattcttaccaactgagctaaattcacg 20644003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 45256153 - 45256196
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaatt 81  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||    
T  45256153 atcttacatatattatacattctttctatcaactgcgctaaatt 45256196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 690828 - 690782
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  690828 catatattatacattgtctcttccaactgagctaaactcacaaggac 690782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 7206165 - 7206119
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| |||||| |||||||||||||||||  ||||||||||    
T  7206165 catatattatgcattgtctctaccaactgagctaagctcacgaggac 7206119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 9686497 - 9686451
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||  ||||| | |||||||||||||||||||||||||||    
T  9686497 catatattatgtattgtctataccaactgagctaaattcacgaggac 9686451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 13490765 - 13490723
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacga 86  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||    
T  13490765 catatattatacattgtctctatcaactgagctaaactcacga 13490723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 18782561 - 18782607
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| ||||||||||||||||| ||||||| ||| ||||||    
T  18782561 catatattatgcattgtttctaccaacttagctaaactcatgaggac 18782607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 24592867 - 24592913
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| ||||||  |||||||||||||||| |||||||||||    
T  24592867 catatattatgcattgtccctaccaactgagctaagttcacgaggac 24592913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 26999150 - 26999104
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| |||||| |||||||||||| |||| |||||||||||    
T  26999150 catatattatgcattgtctctaccaactgaactaagttcacgaggac 26999104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 37984395 - 37984349
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    |||||||||| |||||||| ||||||||||||||| || ||||||||    
T  37984395 catatattatgcattgtttataccaactgagctaagtttacgaggac 37984349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 8727724 - 8727761
Alignment:
Q  41 ttacatatattatacattgtttctaccaactgagctaa 78  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  8727724 ttacatatattatgcattgtttctactaactgagctaa 8727761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 30089088 - 30089043
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||| ||||||  |||||||||||||||| |||||||||||    
T  30089088 atatattatgcattgtccctaccaactgagctaagttcacgaggac 30089043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 30125692 - 30125647
Alignment:
Q  45 atatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||| ||||||  |||||||||||||||| |||||||||||    
T  30125692 atatattatgcattgtccctaccaactgagctaagttcacgaggac 30125647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 30799105 - 30799138
Alignment:
Q  40 cttacatatattatacattgtttctaccaactga 73  Q
    |||||||||||||| |||||||||||||||||||    
T  30799105 cttacatatattatgcattgtttctaccaactga 30799138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 2783053 - 2783001
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| ||||||||||||||| | |||||||||||| ||||  ||||||||||    
T  2783053 atcttgcatatattatacattatctctaccaactgaactaagctcacgaggac 2783001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 7029406 - 7029458
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| ||||||||||  ||||||| |||||||||||||||  ||||||||||    
T  7029406 atcttgcatatattatgtattgtttttaccaactgagctaatctcacgaggac 7029458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 11043805 - 11043857
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||||||||||| ||| | ||||||||||| |||| | ||||||||    
T  11043805 atcttacatatattatacactgtctttaccaactgagttaaacttacgaggac 11043857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 17736839 - 17736787
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||||||||| |||| |||||||  |||||||||||||||  ||||||||||    
T  17736839 atcttacatattttatgcattgttcataccaactgagctaagctcacgaggac 17736787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 27412853 - 27412901
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgagg 88  Q
    |||||||||||||| |||||| ||||||||||||| |||  ||||||||    
T  27412853 cttacatatattatgcattgtctctaccaactgagttaagctcacgagg 27412901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 37670502 - 37670542
Alignment:
Q  44 catatattatacattgtttctaccaactgagctaaattcac 84  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  37670502 catatattatacattgttcttaccaactgagctaagttcac 37670542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 42769 - 42722
Alignment:
Q  40 cttacatatattatacattgtttctaccaactgagctaaattcacgag 87  Q
    ||||||||||||||| ||||||||| ||||||||| ||| ||||||||    
T  42769 cttacatatattatatattgtttcttccaactgagttaagttcacgag 42722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 45989 - 45937
Alignment:
Q  38 atcttacatatattatacattgtttctaccaactgagctaaattcacgaggac 90  Q
    ||||| ||||||||||||||| ||  ||||||||||||||| |||||| ||||    
T  45989 atcttgcatatattatacattattcttaccaactgagctaagttcacggggac 45937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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