View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12580_low_19 (Length: 386)

Name: NF12580_low_19
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12580_low_19
NF12580_low_19
[»] chr7 (5 HSPs)
chr7 (16-370)||(7977448-7977794)
chr7 (161-271)||(15092178-15092288)
chr7 (52-249)||(10614577-10614773)
chr7 (196-246)||(10170143-10170193)
chr7 (196-246)||(10177668-10177718)
[»] chr2 (3 HSPs)
chr2 (62-331)||(45245014-45245282)
chr2 (46-255)||(1037577-1037785)
chr2 (154-218)||(32785792-32785856)
[»] chr4 (31 HSPs)
chr4 (30-333)||(659611-659911)
chr4 (35-341)||(8186993-8187298)
chr4 (62-329)||(7225812-7226078)
chr4 (155-255)||(8184051-8184151)
chr4 (63-253)||(3438496-3438684)
chr4 (154-240)||(1548444-1548530)
chr4 (168-332)||(546814-546978)
chr4 (53-250)||(53761692-53761885)
chr4 (46-243)||(553469-553665)
chr4 (46-255)||(55908641-55908849)
chr4 (161-305)||(640843-640987)
chr4 (131-329)||(570255-570453)
chr4 (133-253)||(1537766-1537886)
chr4 (161-243)||(1524513-1524595)
chr4 (134-243)||(1513407-1513516)
chr4 (135-219)||(1519143-1519227)
chr4 (135-253)||(12121458-12121576)
chr4 (166-243)||(1508035-1508112)
chr4 (207-255)||(370898-370946)
chr4 (156-240)||(55505130-55505214)
chr4 (201-271)||(1517563-1517633)
chr4 (46-108)||(1600543-1600605)
chr4 (167-253)||(7307840-7307926)
chr4 (46-98)||(644964-645016)
chr4 (46-86)||(1495835-1495875)
chr4 (46-86)||(1517412-1517452)
chr4 (166-249)||(1552799-1552882)
chr4 (189-243)||(558488-558542)
chr4 (201-255)||(1495986-1496040)
chr4 (188-220)||(566202-566234)
chr4 (46-86)||(1533903-1533943)
[»] chr3 (7 HSPs)
chr3 (52-307)||(51113700-51113954)
chr3 (53-249)||(13470652-13470847)
chr3 (67-331)||(51120827-51121090)
chr3 (65-253)||(51764372-51764559)
chr3 (207-255)||(514801-514849)
chr3 (46-98)||(1657381-1657433)
chr3 (154-221)||(27005792-27005859)
[»] chr8 (9 HSPs)
chr8 (131-271)||(18315270-18315410)
chr8 (131-243)||(32151291-32151403)
chr8 (155-331)||(34936184-34936360)
chr8 (63-306)||(27922435-27922674)
chr8 (161-249)||(17628041-17628129)
chr8 (53-241)||(17636317-17636508)
chr8 (46-243)||(28246208-28246402)
chr8 (132-329)||(21235462-21235659)
chr8 (195-243)||(44736525-44736573)
[»] chr6 (22 HSPs)
chr6 (52-272)||(7131596-7131815)
chr6 (52-332)||(6402761-6403040)
chr6 (52-272)||(7119118-7119337)
chr6 (52-271)||(6432123-6432341)
chr6 (162-342)||(491384-491567)
chr6 (161-272)||(6423178-6423289)
chr6 (167-250)||(6585270-6585353)
chr6 (161-259)||(10579763-10579862)
chr6 (52-249)||(6415950-6416146)
chr6 (46-243)||(11936188-11936384)
chr6 (46-243)||(11948168-11948364)
chr6 (52-328)||(6394769-6395044)
chr6 (161-249)||(7994209-7994297)
chr6 (133-271)||(6409968-6410106)
chr6 (188-305)||(6603256-6603373)
chr6 (166-238)||(14802331-14802403)
chr6 (156-328)||(28934954-28935126)
chr6 (52-244)||(6594525-6594716)
chr6 (67-250)||(9411338-9411517)
chr6 (208-305)||(19632367-19632464)
chr6 (161-219)||(6589350-6589408)
chr6 (133-225)||(12102274-12102366)
[»] chr5 (6 HSPs)
chr5 (41-238)||(32267470-32267663)
chr5 (48-303)||(41901453-41901704)
chr5 (63-272)||(41889484-41889692)
chr5 (161-319)||(20478109-20478267)
chr5 (161-243)||(37937877-37937959)
chr5 (161-221)||(38267583-38267643)
[»] chr1 (10 HSPs)
chr1 (62-238)||(19468428-19468603)
chr1 (167-328)||(7554393-7554554)
chr1 (161-308)||(9586564-9586711)
chr1 (147-231)||(52082583-52082667)
chr1 (167-253)||(29658929-29659015)
chr1 (161-238)||(43634902-43634979)
chr1 (167-254)||(29718956-29719043)
chr1 (278-328)||(52082486-52082536)
chr1 (161-238)||(9581064-9581143)
chr1 (147-231)||(52092779-52092863)
[»] scaffold0041 (1 HSPs)
scaffold0041 (158-326)||(39091-39259)
[»] scaffold0295 (1 HSPs)
scaffold0295 (161-255)||(651-745)
[»] scaffold0807 (1 HSPs)
scaffold0807 (62-117)||(1393-1448)
[»] scaffold0014 (1 HSPs)
scaffold0014 (50-98)||(88950-88998)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 7977794 - 7977448
Alignment:
Q  16 aacctcaaattgatagatggctatggcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7977794 aacctcaaattgatagatggctatggcatttctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgtt 7977695  T
Q  116 caagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatct 215  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |    
T  7977694 caagggtgaatcta-cgtggaatgaaattcgacgtttgcaaactcgaggctttgaacttgtcacatacaacagttgatgataaaacactcta-------t 7977603  T
Q  216 caaagagttgttgtggacttttgcaactattactggaaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgag 315  Q
      |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  7977602 acaagagttgttgtggacttttacaactattactagaaaactgttattatgtcacaagtaatggagtggggcgcgtggtagaaaactgcacactgttgag 7977503  T
Q  316 agagatcaatttgaggggctgctatagggtggataatgatgttgtagccttgatg 370  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||  ||||||||    
T  7977502 agagatcgatttgaggggctgctatagagtggataatgacgttgtttccttgatg 7977448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 15092178 - 15092288
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgtt 260  Q
    |||| |||||| |||||| | ||||  ||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |||   ||||    
T  15092178 gaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgtt 15092277  T
Q  261 attatgtcaca 271  Q
    || ||||||||    
T  15092278 ataatgtcaca 15092288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 249
Target Start/End: Complemental strand, 10614773 - 10614577
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  ||||||||||||||| ||||||||| ||||| ||||| ||| |||||| ||||  ||  ||||  ||||  |||||||||  | |  |||    
T  10614773 gaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctact-tggaatgaacgttgttgtt 10614675  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattact 249  Q
      ||| || |||| ||||||||||||| |||| |  ||| ||||||||||||||||||||||||| ||||  ||| |||| |||||||||||||||||    
T  10614674 cccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattact 10614577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 10170143 - 10170193
Alignment:
Q  196 taaaacactctatgtgatctcaaagagttgttgtggacttttgcaactatt 246  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  10170143 taaaacactctatgtgatctcaaagtattgttgtggacttttgaaactatt 10170193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 10177668 - 10177718
Alignment:
Q  196 taaaacactctatgtgatctcaaagagttgttgtggacttttgcaactatt 246  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  10177668 taaaacactctatgtgatctcaaagtattgttgtggacttttgaaactatt 10177718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 331
Target Start/End: Original strand, 45245014 - 45245282
Alignment:
Q  62 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcg 161  Q
    |||| |||||||||||||||||||||||||| ||||||||| |||  || ||||||||  ||    ||| ||||||| || || ||||||   ||||| |    
T  45245014 gtcatgttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattac-gtggaataaactttgaagttccaaaacttg 45245112  T
Q  162 aggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgtta 261  Q
    ||| |||||| |||||| | ||||  ||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||| || |||| |||||    
T  45245113 aggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgtta 45245212  T
Q  262 ttatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttgagg 331  Q
    | ||||||||  ||| ||||||   || ||||||||||| |||||||  || | ||||||||||||||||    
T  45245213 tcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttgagg 45245282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 255
Target Start/End: Original strand, 1037577 - 1037785
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 145  Q
    ||||||||||||||  || ||||||||||||||||||||||  |||||||||| ||  ||||||  | |||||| ||||  ||||  | |||| || ||     
T  1037577 tctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactact-tagaataaacttt 1037675  T
Q  146 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactat 245  Q
     |||||    || | |||| ||| |||||||||||||||   ||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||| |    
T  1037676 aaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgt 1037775  T
Q  246 tactggaaaa 255  Q
    | ||||||||    
T  1037776 ttctggaaaa 1037785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 32785792 - 32785856
Alignment:
Q  154 caaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaa 218  Q
    |||||| |||| |||||||||||||||||||| | |||||||| || |||| |||||||||||||    
T  32785792 caaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 333
Target Start/End: Complemental strand, 659911 - 659611
Alignment:
Q  30 agatggctatggcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtcta 129  Q
    ||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||| | ||  |||    
T  659911 agatggcaatggcatttctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagcta 659812  T
Q  130 ccgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgt 229  Q
     || | ||| || || ||||||  |||||| |||| ||||||||||||||||||||  ||| || || |||||  |||||||||||||| || ||||| |    
T  659811 -cgagtaataaattttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaaca--ctatgtgatctcaaggaattgtttt 659715  T
Q  230 ggacttttgcaactattactggaaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttga 329  Q
    ||  |||| ||||| |  || |||| ||||  |  | | ||| |||| |||||   ||| | ||||||||||||||| | |||||| |||||||||||||    
T  659714 ggggttttacaactctaccttgaaagctgtcgtggtataacaggtaagggagtaatgcatgcggtagaaaactgcacgcagctgagggagatcaatttga 659615  T
Q  330 gggg 333  Q
    ||||    
T  659614 gggg 659611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 341
Target Start/End: Original strand, 8186993 - 8187298
Alignment:
Q  35 gctatggcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtg 134  Q
    |||||| ||| ||||||||||||||  |||||||||| | |||||||||| | |||||  |||| ||| ||||||  ||| |||| ||  | ||  |  |    
T  8186993 gctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaacttagcctactgtccaagagttgggctctcc-g 8187091  T
Q  135 gaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggact 234  Q
    ||||||| || ||| ||| |||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||  || ||||||||||||||||| ||    
T  8187092 gaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggct 8187191  T
Q  235 tttgcaactattactggaaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttgaggggc 334  Q
    ||||||  | ||||||||||| |||  | | |||||| | || ||||||  | | |||||| |||||||||| |  |||| |||  ||||| ||||| ||    
T  8187192 tttgcagttgttactggaaaattgtcgtaacgtcacagggaagggagtgatggatgtggtaaaaaactgcacgcaactgacagaagtcaatctgaggcgc 8187291  T
Q  335 tgctata 341  Q
    |||||||    
T  8187292 tgctata 8187298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 62 - 329
Target Start/End: Original strand, 7225812 - 7226078
Alignment:
Q  62 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcg 161  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| || |||  ||| |||| ||||  |||| |    ||||| || ||||||  | || | |    
T  7225812 gtcaagttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctac-gcaacatgaactttgaagttctcgaattgg 7225910  T
Q  162 aggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgtta 261  Q
    |||  ||||||||||||||||||| ||||||||| |||  |||   |||||| ||||||||||||||||||||||||||||||||||||||||  ||||     
T  7225911 aggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaaagttgttt 7226010  T
Q  262 ttatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttga 329  Q
    | | |||||    || ||| ||  ||||||||||||||||||||  |  |||||||||||||||||||    
T  7226011 tgaggtcaccgagaagggattgaagcacgtggtagaaaactgcaagcaactgagagagatcaatttga 7226078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 8184051 - 8184151
Alignment:
Q  155 aaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaa 254  Q
    ||||| |||| |||||||||||||||||||| ||||||||||| | |||||||||  |||||||||||||||||||| |||||| |||| ||||||||||    
T  8184051 aaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaa 8184150  T
Q  255 a 255  Q
    |    
T  8184151 a 8184151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 3438496 - 3438684
Alignment:
Q  63 tcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcga 162  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||  |||||| | | |||| | |   ||| |||||| || || ||||  ||| | ||    
T  3438496 tcaagttttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgt-gtgcaatgaactttgatgtttcaaaattgga 3438594  T
Q  163 ggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaa 253  Q
    ||  |||| |||||||||||||| |||||||||||||  |||| |||| |||||||||||||||||||| ||||||||||| |||||||||    
T  3438595 ggtattgagcttgtcacatacaagagttgatgataaat-actccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 3438684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 1548444 - 1548530
Alignment:
Q  154 caaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgca 240  Q
    |||||| |||| ||||||||||||||||||||   |||||||| |||||||| ||||||||||||||||||||||||| ||||||||    
T  1548444 caaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 332
Target Start/End: Complemental strand, 546978 - 546814
Alignment:
Q  168 tgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttattatgt 267  Q
    |||||||||||| |||||  ||  ||||| |||||||||||||||||||||||||||||||||| |||||| || | ||||||||| | |||| | ||||    
T  546978 tgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgt 546879  T
Q  268 cacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttgaggg 332  Q
    ||||   || ||||||   || ||| ||||||||||||||   || |||||||||||||| ||||    
T  546878 cacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaatttaaggg 546814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 53761692 - 53761885
Alignment:
Q  53 aaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagttt 152  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||| ||| |||||   |||||||| ||||  |||   ||||||||| || | ||||     
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagcta-attggaatgaactttgtagttc 53761790  T
Q  153 gcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactg 250  Q
     ||| || ||||||||||||||||||  ||| | |||| | ||||||||||||  ||||||||| |||| |||| |||| ||||||||| ||||||||    
T  53761791 ccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactc--tgtgatctcgaagaattgtcgtgggcttttgcaa-tattactg 53761885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 553665 - 553469
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 145  Q
    |||||||||| | | | ||| |||||||||| ||||||||||||||||||||| ||| || || | |||||||| ||||   ||| ||  | |||| ||     
T  553665 tctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttac-gtacattgaacttt 553567  T
Q  146 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
     |||||  |||||| |||| |||||||||||||  ||||| |||||||||| || ||||  ||||||| ||||||||||||| ||| |||||||||||    
T  553566 aaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaact 553469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 255
Target Start/End: Original strand, 55908641 - 55908849
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 145  Q
    ||||||||||||||  || ||||| ||||||||||||||||  |||||||||| ||  ||||||  |||||||| ||||  ||||  | |||| || ||     
T  55908641 tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactact-tagaataaacttt 55908739  T
Q  146 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactat 245  Q
     |||||    || | |||| ||| |||||||||||||||   ||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||| |    
T  55908740 aaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgt 55908839  T
Q  246 tactggaaaa 255  Q
    | ||||||||    
T  55908840 ttctggaaaa 55908849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 640987 - 640843
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgtt 260  Q
    |||| ||||||||||||| ||||||  ||||||||| |||||||||| |||| |||||||| |||  |||| |||||||| || ||||||||| | |||     
T  640987 gaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtc 640888  T
Q  261 attatgtcacaagtaacggagtggggcacgtggtagaaaactgca 305  Q
    ||||||| ||||  || ||||||   || ||||||||||||||||    
T  640887 attatgtaacaaagaagggagtgaatcatgtggtagaaaactgca 640843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 329
Target Start/End: Complemental strand, 570453 - 570255
Alignment:
Q  131 cgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtg 230  Q
    |||||| |||| || ||||||  ||||||||||| ||||||||||||| |||||  ||||||| |  ||  ||||||| |||| |||||||||||| | |    
T  570453 cgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcg 570354  T
Q  231 gacttttgcaactattactggaaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttga 329  Q
    | ||||||||||| ||||| ||  | ||||||||||| || |  |  || |||   || |||||||||||||||||||  ||||| |||||||||||||    
T  570353 ggcttttgcaactgttacttgagcattgttattatgttactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttga 570255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 1537766 - 1537886
Alignment:
Q  133 tggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgga 232  Q
    ||||||||| || ||||||  |||||| || | ||||||||||||| ||||||  ||| |||| |||||||| | ||| ||||||||| ||||| ||||     
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T
Q  233 cttttgcaactattactggaa 253  Q
    ||||||||||| |||||||||    
T  1537866 cttttgcaacttttactggaa 1537886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 1524513 - 1524595
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    |||| |||||| ||||||| |||||  ||||||||| ||||||||||| |||||||| |||||||| |||| |||||||||||    
T  1524513 gaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaact 1524595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 1513407 - 1513516
Alignment:
Q  134 ggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggac 233  Q
    |||||||| || ||||||  |||||| || | |||||||||||||  |||||  ||||||||| |||||||||| || ||||||||| ||||| |||| |    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  234 ttttgcaact 243  Q
    ||||||||||    
T  1513507 ttttgcaact 1513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  135 gaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaa 219  Q
    ||||||| || ||||||  |||||| |||| ||||||||||||||||||||  ||||||||  || |||||||||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 12121458 - 12121576
Alignment:
Q  135 gaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggact 234  Q
    ||||||| || ||||||  |||||| || | ||||||||||||| ||||||  ||||||||| |||||||||  || ||||||||| ||||  |||| ||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 12121557  T
Q  235 tttgcaactattactggaa 253  Q
    ||||||||| | |||||||    
T  12121558 tttgcaactctcactggaa 12121576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 1508035 - 1508112
Alignment:
Q  166 gttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    |||||||||||||||||| |  ||||||||| ||||||| | ||| ||||||||| ||||| |||| |||||||||||    
T  1508035 gttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaact 1508112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 370946 - 370898
Alignment:
Q  207 atgtgatctcaaagagttgttgtggacttttgcaactattactggaaaa 255  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  370946 atgtgatctcaaagagttgttgtcggcttttgcaactattactgcaaaa 370898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 55505130 - 55505214
Alignment:
Q  156 aactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgca 240  Q
    |||| |||| ||||||||||||| ||||||  ||||| |||  |||||| ||||||| |||||||| |||| |||||||||||||    
T  55505130 aactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgca 55505214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 1517563 - 1517633
Alignment:
Q  201 cactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttattatgtcaca 271  Q
    |||||| ||| |||||||||| |||| ||||| ||||| |||||||||||||||| ||| || ||||||||    
T  1517563 cactctttgtaatctcaaagaattgtcgtggaattttgaaactattactggaaaattgtcatgatgtcaca 1517633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 1600605 - 1600543
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcc 108  Q
    ||||||||||||||  |||||||||||||||||| || ||| ||||||||||| ||| |||||    
T  1600605 tctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcc 1600543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 7307926 - 7307840
Alignment:
Q  167 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaa 253  Q
    |||||||||||| |||||  |||||||||| || ||||   | |||||||||||||||||||| | |||||||| || |||||||||    
T  7307926 ttgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggcttttgcacctgttactggaa 7307840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 645016 - 644964
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 98  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  645016 tctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacattt 644964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 1495835 - 1495875
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 86  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  1495835 tctgaagaaggtattggtcatgttttaaggagatgttgtaa 1495875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 1517412 - 1517452
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 86  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  1517412 tctgaagaaggtatcgatcatgttttaaggagatgttgtaa 1517452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 1552799 - 1552882
Alignment:
Q  166 gttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattact 249  Q
    |||||| |||||||||||||   || ||||| |||||||| ||||||| ||||||| |||| |||| |||||||| || |||||    
T  1552799 gttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttgcagctgttact 1552882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 558542 - 558488
Alignment:
Q  189 ttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    |||||||| || ||||| |||||||||||||||||||| |||| |||||| ||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaact 558488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 1495986 - 1496040
Alignment:
Q  201 cactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaa 255  Q
    |||||| ||| |||||||||| |||| ||||| ||||||||| ||||||||||||    
T  1495986 cactctttgtaatctcaaagaattgtcgtggaattttgcaacaattactggaaaa 1496040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 566234 - 566202
Alignment:
Q  188 gttgatgataaaacactctatgtgatctcaaag 220  Q
    ||||||||| |||||||||||||||||||||||    
T  566234 gttgatgatgaaacactctatgtgatctcaaag 566202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 1533903 - 1533943
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 86  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  1533903 tctgaagaaggtattagtcatgttttaaggagatgttgtaa 1533943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 307
Target Start/End: Original strand, 51113700 - 51113954
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  |||||||||||| |||||||||||| ||||| ||||| ||  |||| |  |||||||   |||  ||||  ||||||||| || |||| |    
T  51113700 gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctact-tggaatgaactttgaagct 51113798  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactgg 251  Q
      |||||| |||| |||  |||||||| ||||||  ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||     
T  51113799 cccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactga 51113898  T
Q  252 aaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcaca 307  Q
    |||| |||||  ||||||||   || ||||||  ||| ||||||||||| ||||||    
T  51113899 aaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcaca 51113954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 249
Target Start/End: Original strand, 13470652 - 13470847
Alignment:
Q  53 aaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagttt 152  Q
    |||||||  ||||||||||||||| ||||||||| ||||| ||||| ||| |||||| ||||  ||  ||||  ||||  ||||||||| || |  |||     
T  13470652 aaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctact-tggaatgaactttgttgttc 13470750  T
Q  153 gcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattact 249  Q
     ||| || |||| ||||||||||||| ||||||  ||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  13470751 ccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattact 13470847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 331
Target Start/End: Original strand, 51120827 - 51121090
Alignment:
Q  67 gttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgaggcg 166  Q
    |||||| |||||||||||||||||||||| || ||| |  || |||||||||| ||||  || |  ||||||||| || ||||||  |||| | |||| |    
T  51120827 gttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgca-tggaatgaactttgaagttctcaaattggaggtg 51120925  T
Q  167 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttattatg 266  Q
    ||||||||||| ||||||| |||||||||| ||| ||| ||||| ||||||||||||||| |||| ||||||||| | |  || |||| |||||  ||||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatg 51121025  T
Q  267 tcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttgagg 331  Q
    |||||   || ||||||   || |||||||||||||||||||   |||||| |||||| ||||||    
T  51121026 tcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgagg 51121090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 253
Target Start/End: Original strand, 51764372 - 51764559
Alignment:
Q  65 aagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgagg 164  Q
    |||||||||||||||||| ||| ||||| ||||| |||||| ||   |||||||| ||||  ||||  ||||||||| || | ||||   || || ||||    
T  51764372 aagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctact-tggaatgaactttgcagttccgaagctggagg 51764470  T
Q  165 cgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaa 253  Q
     |||  ||||||||  ||||| ||||||||||||||||||||||| ||||||||||| |||||| || |||||||||||||||||||||    
T  51764471 tgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaa 51764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 514801 - 514849
Alignment:
Q  207 atgtgatctcaaagagttgttgtggacttttgcaactattactggaaaa 255  Q
    |||||||||| |||||||| ||||| |||||||||||||||||| ||||    
T  514801 atgtgatctcgaagagttgctgtgggcttttgcaactattactgcaaaa 514849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 1657433 - 1657381
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 98  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  1657433 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacattt 1657381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 27005792 - 27005859
Alignment:
Q  154 caaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaaga 221  Q
    |||||| ||||  ||||||||||||||||||| | ||||| ||| |||||| ||||| ||||||||||    
T  27005792 caaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 18315270 - 18315410
Alignment:
Q  131 cgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtg 230  Q
    ||||||||||| ||  |||||  |||||| |||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||     
T  18315270 cgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgta 18315369  T
Q  231 gacttttgcaactattactggaaaactgttattatgtcaca 271  Q
    | ||||||||||| ||| |||||  ||||| | ||||||||    
T  18315370 ggcttttgcaactgttattggaacgctgttgtgatgtcaca 18315410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 32151403 - 32151291
Alignment:
Q  131 cgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtg 230  Q
    ||||||||||| |||||||||| ||| || |||| ||| |||||||||  |||||   |||||||| ||||||||||||||||||||||||||||| |||    
T  32151403 cgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtg 32151304  T
Q  231 gacttttgcaact 243  Q
    | |||||||||||    
T  32151303 ggcttttgcaact 32151291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 331
Target Start/End: Original strand, 34936184 - 34936360
Alignment:
Q  155 aaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaa 254  Q
    ||||| |||| |||| |||||||| |||||| |||||||||||||||||||||||  ||| ||||||||||| |||| |||||||||||||||||  |||    
T  34936184 aaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattacttcaaa 34936283  T
Q  255 actgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttgagg 331  Q
    | |||| | |||||||    || ||||| | ||  ||||| ||||| |||||||   |||| |||||||||||||||    
T  34936284 attgttgtgatgtcacggagaagggagttgagcgtgtggttgaaaattgcacacaattgagggagatcaatttgagg 34936360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 27922674 - 27922435
Alignment:
Q  63 tcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcga 162  Q
    |||||||||| ||| ||| ||||||||||||||||| ||| || ||   ||||||| |||||  |||    | |||||| || ||||||  |||| | ||    
T  27922674 tcaagttttagggatatgctgtaacattagacatttgaacttatccaagtgttcaatggtgaaacta----gaaatgaactttgaagttcccaaattgga 27922579  T
Q  163 ggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttat 262  Q
    || ||||||||||||| ||||||  ||||||||| || |||| ||| |||||||||||||||||||||| |||||| || | | ||| ||||| ||| ||    
T  27922578 ggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattgtaat 27922479  T
Q  263 tatgtcacaagtaacggagtggggcacgtggtagaaaactgcac 306  Q
     || ||||||  || ||||||   || |||||||||||||||||    
T  27922478 gatttcacaaagaagggagtgaaccatgtggtagaaaactgcac 27922435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 17628041 - 17628129
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattact 249  Q
    |||| |||||||||||||||||| | ||||||||||||| |||||  |||||||||||||| ||||| ||| || ||| ||||||||||    
T  17628041 gaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggctcttgaaactattact 17628129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 17636317 - 17636508
Alignment:
Q  53 aaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctac--cg-tggaatgaaattcgaag 149  Q
    |||||||  |||||||||||||| |||||| ||| ||||| ||||| ||| ||| | | |||||||| ||||  ||||  || | ||||||| || ||||    
T  17636317 aaggtatttgtcaagttttaaggggatgttctaatattaggcatttgaacttaggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaag 17636416  T
Q  150 tttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaa 241  Q
    ||  |||| | |||| ||||||||||||||| |||  |||||| ||| || || | |||||||||||||||||||||  | |||||||||||    
T  17636417 ttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagacttttgcaa 17636508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 28246208 - 28246402
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 145  Q
    |||||||||||||| | ||| ||||||| || ||||||||||||||||||||| ||  || |  ||||||||||  |||  ||| | |  | |||| ||     
T  28246208 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagcta-catacattgaacttt 28246306  T
Q  146 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    ||||||  |||||| |||| |||| ||||||||  ||||| ||||||  ||||| ||||||||  |||||||||||||||| | || |||||||||||    
T  28246307 gaagttcccaaactggaggtgttggacttgtcatttacaagagttga--ataaatcactctattggatctcaaagagttgtagcgggcttttgcaact 28246402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 329
Target Start/End: Complemental strand, 21235659 - 21235462
Alignment:
Q  132 gtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 231  Q
    ||||| |||| || ||||||  |||||| |||| ||||||||||||| |||||  ||||||| |  ||  ||||||| |||| |||||||| ||| |  |    
T  21235659 gtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaagagctgtcgcag 21235560  T
Q  232 acttttgcaactattactggaaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttga 329  Q
     ||||||||||| ||||| ||  | |||||||||||||| |  |  || |||   || |||||||||||||||||||  ||||| |||||||||||||    
T  21235559 gcttttgcaactgttacttgagcattgttattatgtcactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttga 21235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 44736573 - 44736525
Alignment:
Q  195 ataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    |||||||||||  |||||||||||||||||||||||| |||||| ||||    
T  44736573 ataaaacactcattgtgatctcaaagagttgttgtgggcttttgtaact 44736525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 272
Target Start/End: Complemental strand, 7131815 - 7131596
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  ||||||||||||||||||||| ||| |||| |||||| ||| |||||   |||||||| ||||  ||||  ||||||||| || |  |||    
T  7131815 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctact-tggaatgaactttgttgtt 7131717  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactgg 251  Q
     || | || |||| ||||||||||||| |||| |  ||||||||| |||||||| |||||||||| |||| |||||| || |||||| |||||||||||     
T  7131716 cgccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactga 7131617  T
Q  252 aaaactgttattatgtcacaa 272  Q
    || | ||||||||||||||||    
T  7131616 aagattgttattatgtcacaa 7131596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 332
Target Start/End: Complemental strand, 6403040 - 6402761
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||| ||| || |  | |||||||| ||||  ||||  |||||| || || | ||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctact-tggaataaactttgcagtt 6402942  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactgg 251  Q
      | |||| || | ||||||||||||| |||| |  ||||||||| |||||||||||||||||||||||| |||| |||| |||||| |||||||| ||     
T  6402941 ccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattga 6402842  T
Q  252 aaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttgaggg 332  Q
     | | |||||| ||||||||   || |||| |   || ||| |||||||||| ||||  |||||||||||  |||||||||    
T  6402841 gagattgttataatgtcacagaaaagggagcgaaacatgtgatagaaaactgtacacaactgagagagatttatttgaggg 6402761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 272
Target Start/End: Complemental strand, 7119337 - 7119118
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  ||||||||||||||||||||| ||| |||| |||||| ||| |||||   |||||||| ||||  ||||  ||||||||| || |  |||    
T  7119337 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctact-tggaatgaactttgttgtt 7119239  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactgg 251  Q
      | | || |||| ||||||||||||| |||| |  ||||||||| |||||||| |||||||||| |||| |||||| || |||||| |||||||||||     
T  7119238 caccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactga 7119139  T
Q  252 aaaactgttattatgtcacaa 272  Q
    || | ||||||||||||||||    
T  7119138 aagattgttattatgtcacaa 7119118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 271
Target Start/End: Complemental strand, 6432341 - 6432123
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  |||||||||||||||||||||||||  ||| |||||| ||| |||||| ||||  ||  ||||  ||||  ||||||||| || ||||||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctaca-tggaatgaactttgaagtt 6432243  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactgg 251  Q
      ||| ||  ||| ||||||||||||| ||||||  ||||||||| ||||||| |||||||||| ||||| ||||||||| ||| |||||||||| |||     
T  6432242 cccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgt 6432143  T
Q  252 aaaactgttattatgtcaca 271  Q
    | || ||| || ||||||||    
T  6432142 acaattgtgataatgtcaca 6432123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 342
Target Start/End: Complemental strand, 491567 - 491384
Alignment:
Q  162 aggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaa---agagttgttgtggacttttgcaactattactggaaaactg 258  Q
    |||| |||||||||||||||||||  ||| | |||  |||||||||||||||| |||   ||||||||| ||||||||||||||| |  || ||||| ||    
T  491567 aggcattgaacttgtcacatacaagtgttaaagatggaacactctatgtgatcacaattaagagttgttctggacttttgcaactctaccttgaaaattg 491468  T
Q  259 ttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttgaggggctgctatag 342  Q
    || |  | ||||| |||| ||||||  ||| |  |||||||||||||| | ||||||||||||||||||||||||||| |||||    
T  491467 ttgtcgtatcacaggtaagggagtgatgcatgctgtagaaaactgcacgcagctgagagagatcaatttgaggggctgttatag 491384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 6423289 - 6423178
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgtt 260  Q
    |||| ||||||||||||| |||||| ||||   |||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||| | |||     
T  6423289 gaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttgcaactattacttgaagattgtg 6423190  T
Q  261 attatgtcacaa 272  Q
    ||||||| ||||    
T  6423189 attatgtaacaa 6423178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 6585270 - 6585353
Alignment:
Q  167 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactg 250  Q
    |||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||| ||  |||||| |||||||||||    
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactg 6585353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 10579763 - 10579862
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaacta-ttactggaaaactgt 259  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||| ||||||| | |||||| ||||| |||||| ||||||||    
T  10579763 gaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaactatttactgaaaaactgt 10579862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 249
Target Start/End: Complemental strand, 6416146 - 6415950
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  |||||||||||| || ||||||||| ||| | ||||| ||| |||||| ||||  ||  ||||  ||||  ||||||| | || | ||||    
T  6416146 gaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctaca-tggaatggactttgtagtt 6416048  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattact 249  Q
      ||| || |||| ||||||||||||| ||||||  ||| |||||||||| ||||||||||||||||||| |||| | || |||||||||||||||||    
T  6416047 cccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattact 6415950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 11936188 - 11936384
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 145  Q
    |||||||||||||| | ||| ||||||| || ||||||||||||||||||||| ||  || |  | ||||||||  |||  |||| ||  | |||| ||     
T  11936188 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctac-gtacattgaacttt 11936286  T
Q  146 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    ||||||  |||||| |||| |||| ||||||||  ||||| |||||| |||||| ||||||||  |||||||||||||||| |||| |||||||||||    
T  11936287 gaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaact 11936384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 11948168 - 11948364
Alignment:
Q  46 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 145  Q
    |||||||||||||| | ||| ||||||| || ||||||||||||||||||||| ||  || |  | ||||||||  |||  |||| ||  | |||| ||     
T  11948168 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctac-gtacattgaacttt 11948266  T
Q  146 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    ||||||  |||||| |||| |||| ||||||||  ||||| |||||| |||||| ||||||||  |||||||||||||||| |||| |||||||||||    
T  11948267 gaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaact 11948364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 328
Target Start/End: Complemental strand, 6395044 - 6394769
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  |||||||||||| || |||||||||  ||| |||||| ||| |||| |  |||||||  ||||  ||||  ||||||||| || | ||||    
T  6395044 gaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactaca-tggaatgaactttgcagtt 6394946  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactgg 251  Q
      | | || |||| ||||||||||||| ||||||  ||||||||| |||| || | |||||||||||||| ||||||||| ||||||||| ||  ||| |    
T  6394945 cccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttg 6394846  T
Q  252 aaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttg 328  Q
    | || ||| |  ||||||||   || || ||||  || |||||||||||||||||||   |||||||||| ||||||    
T  6394845 ataattgtaaaaatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttg 6394769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 7994209 - 7994297
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattact 249  Q
    |||| ||||||| ||||| ||||||  ||| ||||  ||||||| |||||||||||||||| ||||| |||||||||||||||||||||    
T  7994209 gaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattact 7994297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 6410106 - 6409968
Alignment:
Q  133 tggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgga 232  Q
    ||||||||| || ||||||  ||| ||  ||| |||||||| |||| ||||||  ||||||||| |||| || |||||||||||||||| ||||||| |     
T  6410106 tggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcgg 6410007  T
Q  233 cttttgcaactattactggaaaactgttattatgtcaca 271  Q
    ||||||||||||||  || | |||||| || ||||||||    
T  6410006 cttttgcaactatttttgtacaactgtgataatgtcaca 6409968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 188 - 305
Target Start/End: Original strand, 6603256 - 6603373
Alignment:
Q  188 gttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttattatgtcacaagtaacggagtggggc 287  Q
    ||||||||| ||||| |||||| ||||||||||||||||  ||| |||||| |||||||| || || | |||||||||||||||   || ||||||   |    
T  6603256 gttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaac 6603355  T
Q  288 acgtggtagaaaactgca 305  Q
    | ||||||||||||||||    
T  6603356 atgtggtagaaaactgca 6603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 14802403 - 14802331
Alignment:
Q  166 gttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttg 238  Q
    |||||| |||||| ||||||  ||||||||| |||||||||||||||| ||||||| ||||||||| ||||||    
T  14802403 gttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 328
Target Start/End: Complemental strand, 28935126 - 28934954
Alignment:
Q  156 aactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaa 255  Q
    ||||||||| |||||||||||||||||||| |||||| ||| || |||||  |||||| ||||||||||||  ||||||| |||  || || |||  |||    
T  28935126 aactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggacttatgcgcctgttgctgttaaa 28935027  T
Q  256 ctgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttg 328  Q
    |||  ||  ||| ||||  || ||||||  ||| ||||||||||| |||||||  || ||||||||| |||||    
T  28935026 ctgcgatagtgttacaaaaaaaggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 28934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 6594525 - 6594716
Alignment:
Q  52 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 151  Q
    ||||||||  ||||||||||||||||||||| ||| |||| ||||||  || || || | |||||||| ||||  ||||  |||||| || ||   ||||    
T  6594525 gaaggtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctaca-tggaataaactttttagtt 6594623  T
Q  152 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaacta 244  Q
      |||||| |||| |||| |||||||| |||||   ||||||||| | |||||   |||||||||||||| ||||||||| ||||| ||||||    
T  6594624 cccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggcttttacaacta 6594716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 9411517 - 9411338
Alignment:
Q  67 gttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgaggcg 166  Q
    ||||||||||||||| |||||||||||||||| ||||||||   |||| |  | ||||  || |  |||| |||| || || |||  ||| || |||| |    
T  9411517 gttttaaggagatgtggtaacattagacatttgaacctagc---ttgtacttgtgtgacgct-cgatggattgaactttgaggttcccaagctggaggtg 9411422  T
Q  167 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactg 250  Q
    |||||||||||| |||||   |||   ||| ||| |||||||| ||||||||||| |||| |||||||||||||||| ||||||    
T  9411421 ttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactg 9411338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 19632464 - 19632367
Alignment:
Q  208 tgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactgca 305  Q
    |||||||||||||| ||||||||| ||||||||||| |||||| |||| |||  | || |||||   || ||||||   |||||||||||||||||||    
T  19632464 tgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaaactgca 19632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 6589350 - 6589408
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaa 219  Q
    |||| ||||||||||||| ||||||  ||| ||||||||||||| ||| ||||||||||    
T  6589350 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 12102366 - 12102274
Alignment:
Q  133 tggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttg 225  Q
    |||| |||| || ||||||  |||||| |||| |||||||||||||||||||  ||||||| |  ||  ||||||| |||| |||||||||||    
T  12102366 tggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 32267663 - 32267470
Alignment:
Q  41 gcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatga 140  Q
    |||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||| || ||   |||||||  ||||  |||    | |||||    
T  32267663 gcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaacta----gaaatga 32267568  T
Q  141 aattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttg 238  Q
    | || ||||||  |||| | ||||  |||||||||||||| |||| |||||||||| || |||| ||| |||||||||||||||||||||| ||||||    
T  32267567 actttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttg 32267470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 48 - 303
Target Start/End: Original strand, 41901453 - 41901704
Alignment:
Q  48 tgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcga 147  Q
    |||||||||||| | ||||||||||||||  |||||||||||||||||||| ||| || ||   ||||| |  ||||| |||    | |||  | || ||    
T  41901453 tgaagaaggtattgttcaagttttaaggatgtgttgtaacattagacatttgaacttatccaagtgttccatagtgagacta----gaaatagactttga 41901548  T
Q  148 agtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactatta 247  Q
    ||||  |||||| |||| ||||||||||||| |||||| |||||||||| || |||| ||| ||||||||||||||||||||||||||||| || | | |    
T  41901549 agttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtca 41901648  T
Q  248 ctggaaaactgttattatgtcacaagtaacggagtggggcacgtggtagaaaactg 303  Q
    ||  || | ||| || |||||||||  || ||||||  ||| ||||||||||||||    
T  41901649 cttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactg 41901704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 272
Target Start/End: Original strand, 41889484 - 41889692
Alignment:
Q  63 tcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcga 162  Q
    |||||||||||||| |||||||||||||||| |||| ||| || || | |||||||  ||||  ||||  || |||||| ||  |||||  |||| | ||    
T  41889484 tcaagttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctact-tgaaatgaactttaaagttcccaaattgga 41889582  T
Q  163 ggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttat 262  Q
    || ||||||||| ||| |||||| |||||||||| ||||||| |||  |||||||||||||||||| || |||| | || | |||||  |||| ||||||    
T  41889583 ggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttat 41889682  T
Q  263 tatgtcacaa 272  Q
     |||||||||    
T  41889683 gatgtcacaa 41889692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 319
Target Start/End: Original strand, 20478109 - 20478267
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgtt 260  Q
    |||| ||||||||||||| ||||||  ||||||||  ||||| | | ||||||||||| || ||||||||| ||||||||| || ||||| |||| ||      
T  20478109 gaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaaatactactgaaaaattgcg 20478208  T
Q  261 attatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagag 319  Q
    || |||||||||  || |||| |   || || ||||||||||||||||  |||||||||    
T  20478209 ataatgtcacaatgaaaggagcgaaacatgtcgtagaaaactgcacacaactgagagag 20478267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 37937959 - 37937877
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaact 243  Q
    |||| |||| ||||| ||||||||| | |||||||| ||||||||||||| ||||||||||  ||| |||| |||||||||||    
T  37937959 gaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgcaact 37937877  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 38267583 - 38267643
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaaga 221  Q
    |||| |||| ||||| ||||||||| |||||||||| | ||||||||||| ||||||||||    
T  38267583 gaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaaga 38267643  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 19468428 - 19468603
Alignment:
Q  62 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcg 161  Q
    |||||||||||||||| |||| ||| ||||| ||||||||| |||||   |||||||| |||| |||||  |||| |||| || | ||||  ||| || |    
T  19468428 gtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctact-tggagtgaactttgtagttcccaagctgg 19468526  T
Q  162 aggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttg 238  Q
    ||| |||||| |||||| ||||||  ||||||||| ||||||| ||||||||||||||||  |||||||||||||||    
T  19468527 aggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtggacttttg 19468603  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 328
Target Start/End: Complemental strand, 7554554 - 7554393
Alignment:
Q  167 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgttattatg 266  Q
    |||||||| ||| ||||||  ||||||||| || |||||||| ||||||||||||||||| |||||||||| ||||| |||||| ||   ||| || |||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  267 tcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttg 328  Q
    |||||   || ||||||  ||| ||||||||||||||||| || || | |||||| ||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 7554393  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 9586711 - 9586564
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaactgtt 260  Q
    |||| ||||||||||||| |||||   ||| ||||| ||||||| ||||||| ||||| || |||| ||||||||||||| || |||| | |||| ||||    
T  9586711 gaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttgcatcttttacagaaaaattgtt 9586612  T
Q  261 attatgtcacaagtaacggagtggggcacgtggtagaaaactgcacac 308  Q
    || |||||||||| || ||| ||  ||  ||||||||||| |||||||    
T  9586611 atcatgtcacaagcaatggattgaagcgtgtggtagaaaattgcacac 9586564  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 52082667 - 52082583
Alignment:
Q  147 aagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 231  Q
    |||||| |||| | |||| ||||||||||||| | |||| | |||||||| ||||| | ||||||||||||||||||||||||||    
T  52082667 aagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 52082583  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 29658929 - 29659015
Alignment:
Q  167 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaa 253  Q
    |||||||||||| |||| | ||||||||||||| ||||| || | || |||| |||||||||||| ||||||||| | |||||||||    
T  29658929 ttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaa 29659015  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 43634979 - 43634902
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttg 238  Q
    |||||||||||||||||| ||||||  ||||| |||  |||||| ||||||| |||||||| |||| |||||||||||    
T  43634979 gaggcgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttg 43634902  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 29718956 - 29719043
Alignment:
Q  167 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaa 254  Q
    |||||||||||| |||| |  |||||||||||| ||||| || | || |||| |||||||||||| ||||||||| | ||||||||||    
T  29718956 ttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaaa 29719043  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 52082536 - 52082486
Alignment:
Q  278 ggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatttg 328  Q
    ||||| |||||||| ||||||||||||||||  ||||||||||| ||||||    
T  52082536 ggagtcgggcacgtagtagaaaactgcacacgactgagagagataaatttg 52082486  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 9581143 - 9581064
Alignment:
Q  161 gaggcgttgaacttgtcacatacaaca--gttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttg 238  Q
    |||| |||||||||||||  ||||| |  ||| ||||| |||| || |||||||||||||||| |||| |||||||||||    
T  9581143 gaggtgttgaacttgtcatgtacaaaaaagttaatgatgaaacgctttatgtgatctcaaagaattgtcgtggacttttg 9581064  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 52092863 - 52092779
Alignment:
Q  147 aagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 231  Q
    |||||| |||| | |||| |||||||||| || | |||| | |||||||| | ||| | ||||||||||||||||||| ||||||    
T  52092863 aagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgg 52092779  T

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Target: scaffold0041 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 326
Target Start/End: Complemental strand, 39259 - 39091
Alignment:
Q  158 ctcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaact 257  Q
    ||||||| |||||||||| ||  |||||  ||| ||||| ||||||| ||||||||||||||||||||| |||| |||||||| ||  |||||||||| |    
T  39259 ctcgaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcacctgatactggaaaaat 39160  T
Q  258 gttattatgtcacaagtaacggagtggggcacgtggtagaaaactgcacactgctgagagagatcaatt 326  Q
    ||| |  ||||||||  || ||||||   || |||||| | |||||||| |  ||||||||||| ||||    
T  39159 gttctcgtgtcacaatgaagggagtgaaacatgtggtaaacaactgcacgcaactgagagagattaatt 39091  T

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Target: scaffold0295 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 651 - 745
Alignment:
Q  161 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggacttttgcaactattactggaaaa 255  Q
    |||| ||| ||||||||||||||||  || |||||| ||||||||||| ||||||| |||| ||||||||| || || ||||| |||||||||||    
T  651 gaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttactggaaaa 745  T

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Target: scaffold0807 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 1393 - 1448
Alignment:
Q  62 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttca 117  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||| ||||||    
T  1393 gtcaagttttaaggagatgttataagattagacatttgaacttagcctggtgttca 1448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 88998 - 88950
Alignment:
Q  50 aagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 98  Q
    |||||||||| | |||  ||||||||||||||||||| |||||||||||    
T  88998 aagaaggtattgatcagattttaaggagatgttgtaagattagacattt 88950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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