View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_20 (Length: 385)
Name: NF12580_low_20
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 33131251 - 33130893
Alignment:
| Q |
11 |
cagagagagggatcatgaacgggatgtagaacatgatcgttatcgcgaaaaggataaggattatgaagttggggaaactgatcggggaagatctcatgat |
110 |
Q |
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| T |
33131251 |
cagagaaagggatcatgaacgggatgtagaacatgatcgttatcgcgaaaaggataaggattatgaagttggggaaactgatcggggaagatctcatgat |
33131152 |
T |
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| Q |
111 |
aggggtgctgattacgatcatgttgaatctaaacatgagaaggaacctcatggtgaaatagagcgggactatgaacctgatgatcaccgtgggcggtaca |
210 |
Q |
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| T |
33131151 |
aggggtgctgattacgatcatgttgaatctaaacatgagaaggaacctcatggtgaaatagagcgggactatgaacctgatgatcaccatgggcggtaca |
33131052 |
T |
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| Q |
211 |
aagaacctgggc-ggtacaaagaacctcatgcagatcctgaacatgatcctgatcactataaccattatgagcatcagagaggacgggggcagtatgatg |
309 |
Q |
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| T |
33131051 |
aagaacctgggcatggacatag----gcatgcagatcctgaacatgatcctgatcactataaccattatgagcatcagagaggacgggggcagtatgatg |
33130956 |
T |
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| Q |
310 |
aaggagatgaccgtggtgattacaatcaatatcctgatcatgctaagatggaagatgtccatc |
372 |
Q |
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| T |
33130955 |
aaggagatgaccgtggggattacaatcaatatcctgatcatgctaagatggaagatgaccatc |
33130893 |
T |
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