View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_23 (Length: 358)
Name: NF12580_low_23
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 53 - 343
Target Start/End: Complemental strand, 3664094 - 3663805
Alignment:
| Q |
53 |
agtagagctctaagagcttttgaggtgttctaagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttg |
152 |
Q |
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| T |
3664094 |
agtagatctctaagagcttttgaggtgttctaagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttg |
3663995 |
T |
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| Q |
153 |
tcacgattttgaggaaaatttgacaatgtcatatttgctttattttgtggcgagaaaggaacaaatcgtgacacaatttggagagcattaattctaaaat |
252 |
Q |
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| T |
3663994 |
ccacgattttgaggaaaatttgacaatgtca-atttgctttattttgtggcgagaaaggaacaaatcatgacacaatttggagagcattaattctaaaat |
3663896 |
T |
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| Q |
253 |
ttgaaagttaaagagaaattgagacacgatttagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaacttcat |
343 |
Q |
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| T |
3663895 |
ttgaaagttaaagagaaatcaaggcacgatttagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaacttcat |
3663805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 3664352 - 3664317
Alignment:
| Q |
19 |
atatgatgtttagttagttattttcatgttatttag |
54 |
Q |
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| T |
3664352 |
atatgatgtttagttagttattttcatgttatttag |
3664317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 340
Target Start/End: Original strand, 5819887 - 5820163
Alignment:
| Q |
64 |
aagagcttttgaggtgtt-ctaagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttgtcacgatttt |
162 |
Q |
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| T |
5819887 |
aagaggttttaaggtgtttctaaattggaaaagactacattcaagaatcaagaaagactaaaaattatgccacaaaaatgctacatcgtgtcacaattct |
5819986 |
T |
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| Q |
163 |
gaggaaaatttgacaatgtcatatttgctttattttgtggcgagaaaggaacaaatcgtgacacaatttggagagcattaattctaaaatttgaaagtta |
262 |
Q |
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| T |
5819987 |
aaggaaaaatggagcttttca-attcacattattttgtggtccgaaaagagaaaatcatgacacgaatcgaagagcgtcaaatctgaaatttgaaatttg |
5820085 |
T |
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| Q |
263 |
aagagaaattgagacacgatttagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaactt |
340 |
Q |
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| T |
5820086 |
atgagaaatagggacacaatttatcaaatcgggagacgattttaacgttacatattgagatccataaaaacccaactt |
5820163 |
T |
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