View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_low_26 (Length: 346)
Name: NF12580_low_26
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 33894695 - 33894385
Alignment:
| Q |
20 |
caatcaagcaaagaattttggtgcatctgcatcatcatcatcattgtttggtcattttggaatatcaccacagtctcaacaacaacaatggaaccatctt |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33894695 |
caatcaagcaaaaaattttggtgcatctgcatcatcatcatcattgtttggtccttttggaatatcaccacagtctcaacaacaacaatggaaccatctt |
33894596 |
T |
|
| Q |
120 |
gtctctagatcacaccctcaaacccaattccatggtcaatttcagttttcagaaccacaattacatcctcagggttttgcacaagctcactatgcacagt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33894595 |
gtctctagatcacaccctcaaacccaattccatggtcaatttcagttttcagaaccacaattacatcctcagggttttgcacaagctcactatgcacagt |
33894496 |
T |
|
| Q |
220 |
tgcagtctcaggcagcacttgcttctttacaatcatcacaaactcaacctgttactccattgcataatgccaataccaatactaatgttgtatcgactcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33894495 |
tgcagtctcaggcagcacttgcttctttacaatcatcacaaactcaacctgttactccattgcataatgccaataccaatactaatgttgtatcgactcc |
33894396 |
T |
|
| Q |
320 |
ggctaccggtg |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
33894395 |
ggctaccggtg |
33894385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University