View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_28 (Length: 337)
Name: NF12580_low_28
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_28 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 28609362 - 28609053
Alignment:
| Q |
16 |
aaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttccctgtccaactacgtata |
115 |
Q |
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| T |
28609362 |
aaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttccctgtccaactatgtata |
28609263 |
T |
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| Q |
116 |
aatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28609262 |
aatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgttgttcat |
28609163 |
T |
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| Q |
216 |
cgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28609162 |
cgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaatagataatatgccccttgctttatcatgactt |
28609063 |
T |
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| Q |
316 |
gtgatgtcca |
325 |
Q |
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||| |||||| |
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| T |
28609062 |
gtggtgtcca |
28609053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 437542 - 437815
Alignment:
| Q |
16 |
aaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttccctgtccaactacgtata |
115 |
Q |
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| T |
437542 |
aaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacgattcccttgtccaactatatata |
437641 |
T |
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| Q |
116 |
aatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcat |
215 |
Q |
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| T |
437642 |
aattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttgttcat |
437741 |
T |
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| Q |
216 |
cgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccatagata |
289 |
Q |
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| T |
437742 |
cgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaatagata |
437815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 13660730 - 13660453
Alignment:
| Q |
19 |
atatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttccctgtccaactacgtataaat |
118 |
Q |
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|||||||| | ||| |||||||||||||| ||||||||||||||||| || ||||| ||||| || ||| ||| || |||||||||| |||||||| |
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| T |
13660730 |
atatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgcccttgtccaactatgtataaat |
13660631 |
T |
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| Q |
119 |
cgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgt |
218 |
Q |
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| T |
13660630 |
cataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccgaatatgatatagaatcattgttattcactgc |
13660531 |
T |
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| Q |
219 |
tgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccatagataatatgcc |
296 |
Q |
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| T |
13660530 |
tttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatatgcc |
13660453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 13653230 - 13652957
Alignment:
| Q |
19 |
atatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttccctgtccaactacgtataaat |
118 |
Q |
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|||||||| | ||| |||||||||||||| ||||||||||||||||| || ||||| ||||| || ||| ||| || |||||||||| |||||||| |
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| T |
13653230 |
atatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgcccttgtccaactatgtataaat |
13653131 |
T |
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| Q |
119 |
cgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgt |
218 |
Q |
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| T |
13653130 |
cacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatataaaatcattgttattcactgc |
13653031 |
T |
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| Q |
219 |
tgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccatagataata |
292 |
Q |
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| T |
13653030 |
tttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataata |
13652957 |
T |
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