View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12580_low_3 (Length: 708)

Name: NF12580_low_3
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12580_low_3
NF12580_low_3
[»] chr5 (8 HSPs)
chr5 (18-340)||(30741535-30741859)
chr5 (369-691)||(30741535-30741859)
chr5 (227-324)||(30064325-30064422)
chr5 (385-482)||(30064325-30064422)
chr5 (388-453)||(30704144-30704209)
chr5 (256-321)||(30704144-30704209)
chr5 (227-322)||(30052445-30052541)
chr5 (387-482)||(30052445-30052541)
[»] chr4 (2 HSPs)
chr4 (373-469)||(4227352-4227448)
chr4 (240-336)||(4227352-4227448)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 30741535 - 30741859
Alignment:
Q  18 tatcacaccaagtaaa--aagcattcacatcgcataatagaaaagagaattccttttaacctttcttgtcacttctaannnnnnnnnnnnnnnnaaacct 115  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||    
T  30741535 tatcacaccaagtaaagcaagcattcacatcgcataatagaaaagagaattccttttaacctttcttgtcacttctaatttttcatttctttttaaacct 30741634  T
Q  116 ttcatgatagtaaagagaagataatagtttctttttagaccttagcaaagttatttgttggaataacgaatacacacacattatggaaccatgttttaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30741635 ttcatgatagtaaagagaagataatagtttctttttagaccttagcaaagttatttgttggaataacgaatacacacacattatggaaccatgttttaag 30741734  T
Q  216 caaagtttatgttcaataccaaaaattttgtaaagcattgtgaattatatatttgatgtgaatggtagtgtagaataaatcgtgcaattacaacattata 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30741735 caaagtttatgttcaataccaaaaattttgtaaagcattgtgaattatatatttgatgtgaatggtagtgtagaataaatcgtgcaattacaacattata 30741834  T
Q  316 tacacattctttcttattcaacgaa 340  Q
    |||||||||||||||||||||||||    
T  30741835 tacacattctttcttattcaacgaa 30741859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 369 - 691
Target Start/End: Complemental strand, 30741859 - 30741535
Alignment:
Q  369 ttcgttgaataagaaagaatgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattcacaatgctttacaaaa 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30741859 ttcgttgaataagaaagaatgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattcacaatgctttacaaaa 30741760  T
Q  469 tttttggtattgaacataaactttgcttaaaacatggttccataatgtgtgtgtattcgttattccaacaaataactttgctaaggtctaaaaagaaact 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30741759 tttttggtattgaacataaactttgcttaaaacatggttccataatgtgtgtgtattcgttattccaacaaataactttgctaaggtctaaaaagaaact 30741660  T
Q  569 attatcttctctttactatcatgaaaggtttnnnnnnnnnnnnnnnnttagaagtgacaagaaaggttaaaaggaattctcttttctattatgcgatgtg 668  Q
    |||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30741659 attatcttctctttactatcatgaaaggtttaaaaagaaatgaaaaattagaagtgacaagaaaggttaaaaggaattctcttttctattatgcgatgtg 30741560  T
Q  669 aatgctt--tttacttggtgtgata 691  Q
    |||||||  ||||||||||||||||    
T  30741559 aatgcttgctttacttggtgtgata 30741535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 30064325 - 30064422
Alignment:
Q  227 ttcaataccaaaaattttgtaaagcattgtgaattatatatttgatgtgaatggtagtgtagaataaatcgtgcaattacaacattatatacacattc 324  Q
    ||||||||||||   ||| |||| || | ||||||||||| ||| | |||||| || |||| |||||||| ||||||||||| |||| ||||||||||    
T  30064325 ttcaataccaaattatttttaaatcaatatgaattatataattggtttgaatgataatgtataataaatcatgcaattacaaaattaaatacacattc 30064422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 482
Target Start/End: Complemental strand, 30064422 - 30064325
Alignment:
Q  385 gaatgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattcacaatgctttacaaaatttttggtattgaa 482  Q
    |||||||||| |||| ||||||||||| |||||||| |||| || |||||| | ||| ||||||||||| | || |||| |||   ||||||||||||    
T  30064422 gaatgtgtatttaattttgtaattgcatgatttattatacattatcattcaaaccaattatataattcatattgatttaaaaataatttggtattgaa 30064325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 30704144 - 30704209
Alignment:
Q  388 tgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattca 453  Q
    ||||||| |||| ||||||||||| |||||||| |||| || |||||| ||||| |||||||||||    
T  30704144 tgtgtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattca 30704209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 30704209 - 30704144
Alignment:
Q  256 tgaattatatatttgatgtgaatggtagtgtagaataaatcgtgcaattacaacattatatacaca 321  Q
    ||||||||||| ||||| |||||| || |||| |||||||| ||||||||||| |||| |||||||    
T  30704209 tgaattatataattgatttgaatgataatgtaaaataaatcatgcaattacaaaattaaatacaca 30704144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 30052445 - 30052541
Alignment:
Q  227 ttcaataccaaaa-attttgtaaagcattgtgaattatatatttgatgtgaatggtagtgtagaataaatcgtgcaattacaacattatatacacat 322  Q
    ||||||||||||  ||||| |||| || | ||||||||||| ||| | |||||| || |||| |||||||| ||||||||||| |||| ||||||||    
T  30052445 ttcaataccaaattattttttaaatcaatatgaattatataattggtttgaatgataatgtataataaatcatgcaattacaaaattaaatacacat 30052541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 30052541 - 30052445
Alignment:
Q  387 atgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattcacaatgctttacaaaat-ttttggtattgaa 482  Q
    |||||||| |||| ||||||||||| |||||||| |||| || |||||| | ||| ||||||||||| | || |||| |||||  ||||||||||||    
T  30052541 atgtgtatttaattttgtaattgcatgatttattatacattatcattcaaaccaattatataattcatattgatttaaaaaataatttggtattgaa 30052445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 469
Target Start/End: Original strand, 4227352 - 4227448
Alignment:
Q  373 ttgaataagaaagaatgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattcacaatgctttacaaaat 469  Q
    |||||||||||||||||  ||| |||  || ||||| || ||||||||||||| || |||||||||||| ||| ||||||||| || ||| ||||||    
T  4227352 ttgaataagaaagaatgcatatttaaatttttaatttcatgatttattctacattatcattcacatcaattatgtaattcacattgatttgcaaaat 4227448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 4227448 - 4227352
Alignment:
Q  240 attttgtaaagcattgtgaattatatatttgatgtgaatggtagtgtagaataaatcgtgcaattacaacattatatacacattctttcttattcaa 336  Q
    |||||| ||| || ||||||||| ||| |||||||||||| || ||||||||||||| || ||||| ||  ||| |||  |||||||||||||||||    
T  4227448 attttgcaaatcaatgtgaattacataattgatgtgaatgataatgtagaataaatcatgaaattaaaaatttaaatatgcattctttcttattcaa 4227352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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