View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_30 (Length: 319)
Name: NF12580_low_30
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 16108441 - 16108150
Alignment:
| Q |
15 |
agcagagattttgaaatatgcatcagacacaatttctaatgcctgaatgttttaccttccgaactccaaaactacataattcaatgcacaaattgaacaa |
114 |
Q |
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| T |
16108441 |
agcaaagattttgaaatatgcatcagacaaaatttctcatgcctgaatattttaccttccgaactccaaaactacataattcaatgcacaaattgaacaa |
16108342 |
T |
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| Q |
115 |
aactattgaaaaaagtgtgatcttcgcaaaaattcaatcgccggtaggtgtccctccaaggctaacaacaattaatcatggttataatcatattctatga |
214 |
Q |
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| T |
16108341 |
aactattgaaaaaagtgtgatcttcgcaaaaattcaatcgccggtaggtgtccctccaaggctaacaacaattaatcatggttataatcatattctatga |
16108242 |
T |
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| Q |
215 |
agtcggtatacattggagagccgccatcctctgctaggtgaagaagggaaaaacattcatcacaaaaataacaagggttgtctgatgtccat |
306 |
Q |
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| T |
16108241 |
agtcggtatacattggagagccgccatcctctgctaggtgaagaagggaaaaacattcatcacaaaaataacaagggttgtctggtgtccat |
16108150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 35 - 306
Target Start/End: Original strand, 56238319 - 56238590
Alignment:
| Q |
35 |
catcagacacaatttctaatgc---ctgaatgttttaccttccgaactccaaaactacataattcaatgcacaaattgaacaaaactattgaaaaaagtg |
131 |
Q |
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| T |
56238319 |
catcagacacaatttctcatgctctctgaataatttaccttccgaactccaaaactacataattcaatgcacaaattgaacaaaactattgtaaaaagtg |
56238418 |
T |
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| Q |
132 |
tgatcttcgcaaaaattcaatcgccggtaggtgtccctccaaggctaacaacaattaatcatggttataatcatattctatgaagtcggtatacattgga |
231 |
Q |
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| T |
56238419 |
tgatctttgcaaaaattcaatcgccagtaggtgtccctccaaggctaacaacaattaatcatggttataatcatattctatgaagtcggtatatgttgga |
56238518 |
T |
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| Q |
232 |
gagccgccatcctctgctaggtgaagaagggaaaaacattcatcacaaaaataacaagggttgtctgatgtccat |
306 |
Q |
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| T |
56238519 |
ga---gccatcctctgctaggtgaagaagggaaaaacattcatcacaaaaataacaagggttgtctggtgtccat |
56238590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 306
Target Start/End: Complemental strand, 16627318 - 16627196
Alignment:
| Q |
181 |
aacaattaatcatggttataatcatattctatgaagtcggtatacattggagagccgccatcctctgctaggtgaagaagggaaaaacattcatcacaaa |
280 |
Q |
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| T |
16627318 |
aacaactaatcatggttataatcatattctatgaagtcagtatacaatggagagcc---atcctctgctaggtgaagtagggaaaagcattcatcacaaa |
16627222 |
T |
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| Q |
281 |
aataacaagggttgtctgatgtccat |
306 |
Q |
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| T |
16627221 |
aataacaagggttttttggtgtccat |
16627196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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