View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_low_32 (Length: 314)
Name: NF12580_low_32
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 46817097 - 46816794
Alignment:
| Q |
1 |
ttaaatctttttcttgtgtttgtatgtaactttgaagagtaaattttgttatt-----ctcaataataaagctaatatgttactttttattactctgcag |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
46817097 |
ttaaatctttttcttgtgtttgtatgtaactttgtagagtaaattttgttattttattctcaataataaagctaatatgttacttttcattactttgcag |
46816998 |
T |
|
| Q |
96 |
cctcagcttcaccacttcctgctcctggtaatgccaaatttcaatttcaaccatttttgtacacaaattcttacataaacccttctaaaatgcctaacaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46816997 |
cctcagcttcaccacttcctgctcctggtaatgccaaatttcaatttcaatcatttttgtacacaaattcttacataaacccttctaaaatgcctaacaa |
46816898 |
T |
|
| Q |
196 |
aaatattttctaacaaatgtgaattccatttcttacttagaaatcgaatcatgctaaataagaaatgaaactagcatgatctatcatctagtaacattgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46816897 |
aaatattttctaacaaatgtgaattccatttcttacttagaaatcgaatcatgctaaataagaaatgaaactagcatgatctatcatctagtaacattgt |
46816798 |
T |
|
| Q |
296 |
aggt |
299 |
Q |
| |
|
|||| |
|
|
| T |
46816797 |
aggt |
46816794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University