View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_36 (Length: 298)
Name: NF12580_low_36
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 35800053 - 35800307
Alignment:
| Q |
1 |
tattacagaacataatcagcagaatatccaacacaaacagaaacatagttatctatcaactttaattgaaaaaccccaattgttaaaaccnnnnnnnccc |
100 |
Q |
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| T |
35800053 |
tattacagaacataatcagcagaatatccaacacaaacagaaacatagttatctatcaactttaattgaaaaaccccaattgttaaaaccaaaaaa-ccc |
35800151 |
T |
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| Q |
101 |
caattgaaccaattcaaaagtaaagtggtcacaatcaaggtttggttttgatgtctccacaacacaattgtgctgcatcaacctgcatgtgacagcaact |
200 |
Q |
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| T |
35800152 |
caattgaaccaattcaaaagtaaagtggtcacaatcaaggtttggttttgatgtctccacaacacaattgtgctgcatcaacctgcatgtgacagcaact |
35800251 |
T |
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| Q |
201 |
attcacaatatcatgatatatttatcaattctaatttctaacattcacccactttt |
256 |
Q |
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| T |
35800252 |
attcacaatatcatgatatatttatcaattctaatttctaacattcacccactttt |
35800307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 35786800 - 35786858
Alignment:
| Q |
2 |
attacagaacataatcagcagaatatccaacacaaacagaaacatagttatctatcaac |
60 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35786800 |
attacagaacataattggcagaagatccaacacaaacagaaacatagttatctatcaac |
35786858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 35761874 - 35761929
Alignment:
| Q |
4 |
tacagaacataatcagcagaatatccaacacaaacagaaacatagttatctatcaa |
59 |
Q |
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|||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
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| T |
35761874 |
tacagaacataatctgcataagatccaacacaaacagaaacatagttatctatcaa |
35761929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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