View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12580_low_38 (Length: 288)

Name: NF12580_low_38
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12580_low_38
NF12580_low_38
[»] chr7 (13 HSPs)
chr7 (4-210)||(4845713-4845919)
chr7 (1-270)||(4631115-4631381)
chr7 (1-210)||(4711773-4711982)
chr7 (41-179)||(4637082-4637220)
chr7 (41-270)||(4672928-4673157)
chr7 (1-198)||(4643895-4644089)
chr7 (56-170)||(4864162-4864276)
chr7 (12-172)||(4667137-4667297)
chr7 (1-126)||(4663179-4663301)
chr7 (41-216)||(4815959-4816134)
chr7 (41-179)||(4783567-4783705)
chr7 (56-170)||(4696931-4697045)
chr7 (41-164)||(4653745-4653868)
[»] chr4 (1 HSPs)
chr4 (44-170)||(18925483-18925609)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 4845919 - 4845713
Alignment:
Q  4 gtattgtttaaatagtttagatgatcacttccataaacacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgc 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845919 gtattgtttaaatagtttagatgatcacttccataaaaacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgc 4845820  T
Q  104 gaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattcgct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||    
T  4845819 gaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctct 4845720  T
Q  204 gttgtca 210  Q
    |||||||    
T  4845719 gttgtca 4845713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 4631115 - 4631381
Alignment:
Q  1 atggtattgtttaaatagtttagatgatcacttccataaacacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaat 100  Q
    ||||||||||||||||||||||||||||    |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631115 atggtattgtttaaatagtttagatgatg---tccaaaataacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaat 4631211  T
Q  101 tgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattc 200  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||| | ||||||||||||||  | |||| | |||| |  ||  |||| | ||||||    
T  4631212 tgcgaaacatacctgtatcataatttggtggaacttgattttcaccagcgttgactctataaactgtttccatagctttgttgttaagaatctggtattc 4631311  T
Q  201 gctgttgtcagaaccaagtagctttgaatggtagttcgtgtcactgagattagtgtaatagagaaaagaa 270  Q
     | | ||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4631312 accgctgtcaaaatcaagtatctttaaatggtagttcgtgtcactgagattagtgtaatagagaaaagaa 4631381  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 4711982 - 4711773
Alignment:
Q  1 atggtattgtttaaatagtttagatgatcacttccataaacacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||||| |||| |||| ||||||||||| |||||||||    
T  4711982 atggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaat 4711883  T
Q  101 tgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattc 200  Q
    | ||||||||||||||||| |   ||||| |||||||||||| |||||| ||||||||||| ||||| |||||| |||| || ||  |||||| ||||||    
T  4711882 tacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattc 4711783  T
Q  201 gctgttgtca 210  Q
      ||||||||    
T  4711782 cgtgttgtca 4711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 4637082 - 4637220
Alignment:
Q  41 cacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 140  Q
    ||||||||||||||  ||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  4637082 cacttgatacactagatgggtactctttctccaagtaaagaggaaaatcattgccccaattgcgaaacatacctgtatcatcacttggtggaacttgatt 4637181  T
Q  141 ttcaccaacattgactctataaaccatctccaaatcttt 179  Q
    || |||||| |||||||||||||||||||||||| ||||    
T  4637182 ttgaccaacgttgactctataaaccatctccaaagcttt 4637220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 270
Target Start/End: Original strand, 4672928 - 4673157
Alignment:
Q  41 cacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 140  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||| ||||| ||||  ||| |||||||| |    
T  4672928 cacttgatacactaagtggatattgtttctccaagtaaccatgaaaatcattgtcccaattacgaaacataccagtatcgtcacccggtggaacttgact 4673027  T
Q  141 ttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattcgctgttgtcagaaccaagtagctttgaatggtagttcgtg 240  Q
    ||||||||| ||||||||||||||||| |||||| |||| || ||  |||||| ||||||  |||||||  |  |||||   ||  |||| || || | |    
T  4673028 ttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatttcaaatgataatttggg 4673127  T
Q  241 tcactgagattagtgtaatagagaaaagaa 270  Q
    |||||||| || ||||||||||||||||||    
T  4673128 tcactgaggtttgtgtaatagagaaaagaa 4673157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4643895 - 4644089
Alignment:
Q  1 atggtattgtttaaatagtttagatgatcacttccataaacacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaat 100  Q
    |||| ||| |||||||||||||||||||    | ||||| || ||||||| || || ||||||| ||||||||||||||||||| |||||||||||||||    
T  4643895 atggcattttttaaatagtttagatgatg---ttcataatcatttgatacgcttagcggatattgtttctccaagtaacgaggataatcattgtcccaat 4643991  T
Q  101 tgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtat 198  Q
    | ||||||||||||||||| |   ||||| |||||||| ||  |||||| |||||||||||||||||||||||| |||| |||||  |||||| ||||    
T  4643992 tacgaaacatacctgtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggtat 4644089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 4864162 - 4864276
Alignment:
Q  56 gtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgac 155  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||| |||||||| ||||||| ||||||||    
T  4864162 gtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacataccagtatcatcacccggtggaacttgactttcaccgacattgac 4864261  T
Q  156 tctataaaccatctc 170  Q
    |||||||||| ||||    
T  4864262 tctataaaccgtctc 4864276  T

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Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 4667137 - 4667297
Alignment:
Q  12 taaatagtttagatgatcacttccataaacacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacata 111  Q
    |||||||||| ||||||||  |||| ||  ||||||||  ||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  4667137 taaatagtttggatgatcaggtccaaaataacttgatatgctttgtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacata 4667236  T
Q  112 cctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatctcca 172  Q
    || ||||| ||||  ||| |||||||| ||||||||||  |||||||||||||| ||||||    
T  4667237 ccagtatcgtcaccaggtggaacttgactttcaccaacgctgactctataaaccgtctcca 4667297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4663179 - 4663301
Alignment:
Q  1 atggtattgtttaaatagtttagatgatcacttccataaacacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaat 100  Q
    |||||||||||||||||||||||||||||   |||| || |||||||||||||  ||||||||||| ||||||||||||||||| ||||||| |||||||    
T  4663179 atggtattgtttaaatagtttagatgatc---tccaaaatcacttgatacactttgtggatattctatctccaagtaacgaggagaatcattttcccaat 4663275  T
Q  101 tgcgaaacatacctgtatcatcactt 126  Q
      ||||||||||||||||||||||||    
T  4663276 aacgaaacatacctgtatcatcactt 4663301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 4816134 - 4815959
Alignment:
Q  41 cacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 140  Q
    ||||||||||||||  ||| || ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |   ||| | ||||||||||    
T  4816134 cacttgatacactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgatt 4816035  T
Q  141 ttcaccaacattgactctataaaccatctccaaatctttatcatttcgaatttcgtattcgctgttgtcagaacca 216  Q
    || |||||| ||||||||||||||| |||| ||| |||| |  ||  ||| || ||||||  ||||||||||||||    
T  4816034 ttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaacca 4815959  T

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Target: chr7; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 4783705 - 4783567
Alignment:
Q  41 cacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 140  Q
    ||||||||||||||  ||| || ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |   ||| | ||||||||||    
T  4783705 cacttgatacactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgatt 4783606  T
Q  141 ttcaccaacattgactctataaaccatctccaaatcttt 179  Q
    || |||||| ||||||||||||||| |||| ||| ||||    
T  4783605 ttgaccaacgttgactctataaaccgtctctaaagcttt 4783567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 4697045 - 4696931
Alignment:
Q  56 gtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgac 155  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |   ||||| ||||||||||  |||| ||||||||    
T  4697045 gtggatattgtttctccaagtaacgaggaaaatcattgtcccagttacgaaacataccagtatcttggtttggtggaacttgattgccacccacattgac 4696946  T
Q  156 tctataaaccatctc 170  Q
    |||||||||| ||||    
T  4696945 tctataaaccgtctc 4696931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 4653745 - 4653868
Alignment:
Q  41 cacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgatt 140  Q
    ||||||||||||| |||||||||| |||||| |||||||||||| |||| || |||||||| ||||||| ||| |||||     ||||| ||||||||||    
T  4653745 cacttgatacacttagtggatattgtttctctaagtaacgaggataatcgttatcccaattacgaaacaaaccagtatctaggtttggtggaacttgatt 4653844  T
Q  141 ttcaccaacattgactctataaac 164  Q
    ||||||||| ||||| ||||||||    
T  4653845 ttcaccaacgttgacactataaac 4653868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 18925609 - 18925483
Alignment:
Q  44 ttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttc 143  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||  |||||||||||||| |||| |||| || |||||||||| ||    
T  18925609 ttgatacacttagtggatattgtttctccaagtaacgaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatc 18925510  T
Q  144 accaacattgactctataaaccatctc 170  Q
    ||||||  |||||||||||||| ||||    
T  18925509 accaacgctgactctataaaccgtctc 18925483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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