View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_39 (Length: 288)
Name: NF12580_low_39
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 3660628 - 3660367
Alignment:
| Q |
20 |
ggagtctcctacaagatatttgttagcaattaagaattagttaataaccttcgtaaatagaacaattctttcaacaaagaaaaataattaataataagtt |
119 |
Q |
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| T |
3660628 |
ggagtctcctaaaagatattttttagcaattaagaattagttaataaccttcgtaaatagaacaattctttc--caaaaaaaaaaagttaataataagtt |
3660531 |
T |
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| Q |
120 |
agaaattagttggtgcaaataaagtctgtgaatattcgatatgcagatttcatggccaagttaggagcctcttcgaacatcaaattcttacttcatgctt |
219 |
Q |
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| T |
3660530 |
agaaattagttggtgcaaataaagtccgtgaatattcgatatgcaaatttcatagccaagttaggagcctcttcgaacattgaattcttacttcatgctt |
3660431 |
T |
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| Q |
220 |
ctcctcc------cgataacctgttgttgtatctcctcaagattgatgcggctgaaactttctt |
277 |
Q |
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| T |
3660430 |
ctcctccaaatgacgatgacttgttgttgtatctccttaagattgatgcggctgaaactttctt |
3660367 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 22654906 - 22655019
Alignment:
| Q |
161 |
tgcagatttcatggccaagttaggagcctcttcgaacatcaaattcttacttcatgcttctcctcccgataacctgttgttgtatctcctcaagattgat |
260 |
Q |
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| T |
22654906 |
tgcagatttcatggtcaagttaggagcctcttcgaatatcaaattcttacttcatttttcttctccagatgac---ttactgcatctcctcaagattgat |
22655002 |
T |
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| Q |
261 |
gcggctgaaactttctt |
277 |
Q |
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| T |
22655003 |
gcggctgaaactttctt |
22655019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 38469969 - 38469925
Alignment:
| Q |
180 |
ttaggagcctcttcgaacatcaaattcttacttcatgcttctcct |
224 |
Q |
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| T |
38469969 |
ttaggagcctcttcgaatatagatttcttacttcatgcttctcct |
38469925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 3024868 - 3024810
Alignment:
| Q |
161 |
tgcagatttcatggccaagttaggagcctcttcgaacatcaaattcttacttcatgctt |
219 |
Q |
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| T |
3024868 |
tgcagatttcatggccaagttaggagcctcttcgaacaacgaatttttacttcatgctt |
3024810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 34412957 - 34413016
Alignment:
| Q |
165 |
gatttcatggccaagttaggagcctcttcgaacatcaaattcttacttcatgcttctcct |
224 |
Q |
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| T |
34412957 |
gattttatggccaagttaatagcctcttcgaatatggatttcttacttcatgcttctcct |
34413016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 22537438 - 22537402
Alignment:
| Q |
241 |
tgtatctcctcaagattgatgcggctgaaactttctt |
277 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |
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| T |
22537438 |
tgtatctcctcaagattgatgcggttgaaattttctt |
22537402 |
T |
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