View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_4 (Length: 619)
Name: NF12580_low_4
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 16 - 604
Target Start/End: Original strand, 36311462 - 36312050
Alignment:
| Q |
16 |
gacaactgcatatatccttaagaaacatcaagcaattcttctagttaacgccatagactccaatcctgtcgataatgttggccacagtctccttgctttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
36311462 |
gacaactgcatatatccttaagaaacatcaagcaattcttctagttaacgccatagactccaatcctgtccataatattggccacagtctccttgctttc |
36311561 |
T |
|
| Q |
116 |
tctaagaactttcacactgctgcttaatctttgtctcttaccagaaatagatggagattcctcaagcagcctctcaacactgccaccaagttcattacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36311562 |
tctaagaactttcacactgctgcttaatctttgtctcttaccagaaatagatggagattcctcaagcagcctctcaacactgccaccaagttcattacaa |
36311661 |
T |
|
| Q |
216 |
atctccttctgcagatcattgctaatcagttcattgatgctaagcatcaaatgcaaagcaatactatcaatgagcctcctcagcacaatcttccaatagg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36311662 |
atctccttctgcagatcattgctaatcagttcattgatgctaagcatcaaatgcaaagcaatactatcaatgagcctcctcagtacaatcttccaatagg |
36311761 |
T |
|
| Q |
316 |
caattaatcttgccttcaagtcaagggcctgattcaacacattgatcggataaattatcagatgattaactttaatgtcattaactccttcaagcttcac |
415 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
36311762 |
caattaatcttgccttcaagtcaaaggcctgattcaacacattgatcggatacattatcagatgattaactttaatgtcatcaactccttctagcttcac |
36311861 |
T |
|
| Q |
416 |
agtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36311862 |
agtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtactccggattacaagtg |
36311961 |
T |
|
| Q |
516 |
taatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctct |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36311962 |
taatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctct |
36312050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 67 - 319
Target Start/End: Original strand, 36289021 - 36289285
Alignment:
| Q |
67 |
catagactccaatcctgtcgataatgttggccacagtctccttgctttctctaagaactttcacactgctgcttaatctttgtctcttaccagaaataga |
166 |
Q |
| |
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|||||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| ||||| | |||| | | ||||| ||||||||||| |
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| T |
36289021 |
catagattccaatcctgtccataattctggcaacagtctccttactttctctaagaactttgacacttcgacttagcttctccctctttccagaaataga |
36289120 |
T |
|
| Q |
167 |
tggagattcctcaagcagcctctcaacactgccacca------------agttcattacaaatctccttctgcagatcattgctaatcagttcattgatg |
254 |
Q |
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||||| || |||||||||||||||| | |||||| || |||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
36289121 |
cggagactcttcaagcagcctctcaatcccaccaccacttggagacaaaagatcattacaaatctccttctgcaaatcattgttaatcagttcattgatg |
36289220 |
T |
|
| Q |
255 |
ctaagcatcaaatgcaaagcaatactatcaatgagcctcctcagcacaatcttccaataggcaat |
319 |
Q |
| |
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|| | ||| ||||||| ||| || || |||||||||||||| | |||||||||||||| ||||| |
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| T |
36289221 |
ctcaacattaaatgcagagctatgctgtcaatgagcctccttaaaacaatcttccaataagcaat |
36289285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 389 - 582
Target Start/End: Original strand, 36304295 - 36304488
Alignment:
| Q |
389 |
aatgtcattaactccttcaagcttcacagtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatat |
488 |
Q |
| |
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||||||| ||| ||||| |||||||||||||||||| ||||||| ||| ||| |||| ||||||||| ||||| ||||||||||||||| |||||| |
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| T |
36304295 |
aatgtcaccaacaccttccagcttcacagtacttgaagctcgatcaacattcaatacttctttcaaaaacacttctcgatgagacatcagcttgttatac |
36304394 |
T |
|
| Q |
489 |
tcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttag |
582 |
Q |
| |
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||||||||||| || || |||| ||||| || || |||||||||| ||||||||||| | |||||| ||||||||||| | |||||||||| |
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| T |
36304395 |
tcctgcaagtactcagggttacccgtgtagtctgtaagcttctccatctcaacagcttgaagcacatgctgaatggaattctttttcttcttag |
36304488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 36292071 - 36292225
Alignment:
| Q |
41 |
catcaagcaattcttctagttaacgccatagactccaatcctgtcgataatgttggccacagtctccttgctttctctaagaactttcacactgctgctt |
140 |
Q |
| |
|
||||||||| | |||||||||| | ||||| |||||||||||| |||||||||||||| ||||| ||||||||||| | |||| ||||||| ||||| |
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| T |
36292071 |
catcaagcactgcttctagttatctccataatttccaatcctgtccataatgttggccacggtctctttgctttctctcaaaactgtcacactcctgctc |
36292170 |
T |
|
| Q |
141 |
aatctttgtctcttaccagaaatagatggagattcctcaagcagcctctcaacac |
195 |
Q |
| |
|
|| | |||||||| || || || || ||||| |||||||||||||||| ||||| |
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|
| T |
36292171 |
aacttctgtctcttgcctgatattgaaggagactcctcaagcagcctcttaacac |
36292225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 559
Target Start/End: Original strand, 36289406 - 36289522
Alignment:
| Q |
443 |
aacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaaca |
542 |
Q |
| |
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||||| ||||| ||||| |||||| |||| |||||| ||||| ||| |||| || || ||||||||||||||||| || | || ||||| || ||| |
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| T |
36289406 |
aacttctttcacaaatgattcttgttgagctatcagcctattatactccagcaaatactcaggattacaagtgtaatctgtcagtttttccatctcgaca |
36289505 |
T |
|
| Q |
543 |
gcttgcatcacatgttg |
559 |
Q |
| |
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|||| |||||||||||| |
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| T |
36289506 |
gcttccatcacatgttg |
36289522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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