View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_low_42 (Length: 261)
Name: NF12580_low_42
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_42 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 23678541 - 23678311
Alignment:
| Q |
18 |
gagagtaaactagcagcaaacattaaatcaggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23678541 |
gagagtaaactagcagcaaacattaaatcgggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
23678442 |
T |
|
| Q |
118 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcatgtttacagccattcatgccaaaccttttcaagatattttcagcatatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23678441 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcaggtttacagccattcatgccaaactttttcaagatattttcagcatatct |
23678342 |
T |
|
| Q |
218 |
cttttgacaaataaaaactccatattcatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23678341 |
cttttgacaaataaaaactccatattcatct |
23678311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 24050817 - 24050587
Alignment:
| Q |
18 |
gagagtaaactagcagcaaacattaaatcaggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24050817 |
gagagtaaactagcagcaaacattaaatcgggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
24050718 |
T |
|
| Q |
118 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcatgtttacagccattcatgccaaaccttttcaagatattttcagcatatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24050717 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcaggtttacagccattcatgccaaactttttcaagatattttcagcatatct |
24050618 |
T |
|
| Q |
218 |
cttttgacaaataaaaactccatattcatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24050617 |
cttttgacaaataaaaactccatattcatct |
24050587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 26410427 - 26410197
Alignment:
| Q |
18 |
gagagtaaactagcagcaaacattaaatcaggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410427 |
gagagtaaactagcagcaaacattaaatcgggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
26410328 |
T |
|
| Q |
118 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcatgtttacagccattcatgccaaaccttttcaagatattttcagcatatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
26410327 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcaggtttacagccattcatgccaaactttttcaagatattttcagcatatct |
26410228 |
T |
|
| Q |
218 |
cttttgacaaataaaaactccatattcatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26410227 |
cttttgacaaataaaaactccatattcatct |
26410197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 17532682 - 17532901
Alignment:
| Q |
21 |
agtaaactagcagcaaacattaaatcaggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttccac |
120 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| |||| || |||||||| | | | ||||||||||||||||| | || ||||| || |||| | |
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| T |
17532682 |
agtaaacttgcagcaaacatgatatcaggtcttgtattagtgagataaaatagattaccaaccaaacttctatagttactagcatcgaccttctttcctc |
17532781 |
T |
|
| Q |
121 |
catcttccttctttaattttccattcaccactaaaggaatatcagcatgtttacagccattcatgccaaaccttttcaagatattttcagcatatctctt |
220 |
Q |
| |
|
||||||| ||||| |||||| ||||||| |||||||| |||||| | || |||||| ||| |||||| | ||||| || || ||||||||| |||| |
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| T |
17532782 |
catcttctttcttcaatttttcattcacaactaaaggtgtatcagttggattgcagccaaacattccaaacttcttcaatattttctcagcatatttctt |
17532881 |
T |
|
| Q |
221 |
ttgacaaataaaaactccat |
240 |
Q |
| |
|
||||||||| || ||||||| |
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|
| T |
17532882 |
ttgacaaatgaagactccat |
17532901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 27206612 - 27206842
Alignment:
| Q |
18 |
gagagtaaactagcagcaaacattaaatcaggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27206612 |
gagagtaaactagcagcaaacattaaatcgggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
27206711 |
T |
|
| Q |
118 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcatgtttacagccattcatgccaaaccttttcaagatattttcagcatatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
27206712 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcaggtttacagccatttatgccaaactttttcaagatattttcagcatatct |
27206811 |
T |
|
| Q |
218 |
cttttgacaaataaaaactccatattcatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27206812 |
cttttgacaaataaaaactccatattcatct |
27206842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 26898199 - 26898429
Alignment:
| Q |
18 |
gagagtaaactagcagcaaacattaaatcaggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttc |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26898199 |
gagagtaaactagcagcaaatattaaatcgggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgtttgcatctactaatcttc |
26898298 |
T |
|
| Q |
118 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcatgtttacagccattcatgccaaaccttttcaagatattttcagcatatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26898299 |
caccatcttccttctttaattttccattcaccactaaaggaatatcagcaggtttacagccattcatgccaaactttttcaagatattttcagcatatct |
26898398 |
T |
|
| Q |
218 |
cttttgacaaataaaaactccatattcatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26898399 |
cttttgacaaataaaaactccatattcatct |
26898429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 35165 - 35384
Alignment:
| Q |
21 |
agtaaactagcagcaaacattaaatcaggtcgtgtagctgttagataaaacaaacttccaaccaaacttctatacatgcttgcatctactaatcttccac |
120 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| |||| || |||||||| | | | ||||||||||||||||| | || ||||| || |||| | |
|
|
| T |
35165 |
agtaaacttgcagcaaacatgatatcaggtcttgtattagtgagataaaatagattaccaaccaaacttctatagttactagcatcgaccttctttcctc |
35264 |
T |
|
| Q |
121 |
catcttccttctttaattttccattcaccactaaaggaatatcagcatgtttacagccattcatgccaaaccttttcaagatattttcagcatatctctt |
220 |
Q |
| |
|
||||||| ||||| |||||| ||||||| |||||||| |||||| | || |||||| ||| ||||| | ||||| || || ||||||||| |||| |
|
|
| T |
35265 |
catcttctttcttcaatttttcattcacaactaaaggtgtatcagttggattgcagccaaacattccaaaattcttcaatattttctcagcatatttctt |
35364 |
T |
|
| Q |
221 |
ttgacaaataaaaactccat |
240 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
35365 |
ttgacaaatgaaaactccat |
35384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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