View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_43 (Length: 261)
Name: NF12580_low_43
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 4172440 - 4172209
Alignment:
| Q |
19 |
aatacctacctgtagcaagtagctacgatcaaacacaatctgaattgaacatgtccatggctacaacaacctcgtcttttatgattcttaaatctccaac |
118 |
Q |
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| T |
4172440 |
aatacctacctgtagctagtagctacgatcaaacacaatctgaattgaacatgtccatggctacaacaacctcgtcttttatgattcttaaatctccaac |
4172341 |
T |
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| Q |
119 |
ttgtcataccagaattggatctctcagaagttccaaattaatcaaggttcaatcttcagtccaaaaggaacatgttgtcattgtgggtggtggcattgca |
218 |
Q |
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| T |
4172340 |
ttgtcataccagaattggatctctcagaagttccaaattaatcaaggttcaatcttcagtccaaaaggaacatgttgtcattgtgggtggtggcattgca |
4172241 |
T |
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| Q |
219 |
ggccttgcaactgctctatcccttcacaggtt |
250 |
Q |
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| T |
4172240 |
ggccttgcaactgctctatcccttcacaggtt |
4172209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 4176484 - 4176346
Alignment:
| Q |
118 |
cttgtcataccagaattggatctctcagaagttccaaattaa---tcaaggttcaatcttcag---tccaaaaggaacatgttgtcattgtgggtggtgg |
211 |
Q |
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| T |
4176484 |
cttgtcgtgccagaattggatccctcagatattccaaattaacaatcaaggctcaatcttctgatgtcagaaaggaacatgttgtaatcgtgggtggtgg |
4176385 |
T |
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| Q |
212 |
cattgcaggccttgcaactgctctatcccttcacaggtt |
250 |
Q |
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| T |
4176384 |
gatagcaggccttgcaactgcactatcccttcacaggtt |
4176346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 4176565 - 4176513
Alignment:
| Q |
46 |
atcaaacacaatctgaattgaacatgtccatggctacaacaacctcgtcttttatg |
101 |
Q |
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| T |
4176565 |
atcaaacacaaacagaattgaacat---catggctacaacaacttcgtcttttatg |
4176513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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