View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_47 (Length: 240)
Name: NF12580_low_47
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 44145316 - 44145116
Alignment:
| Q |
20 |
ttatttcctaatgtcatctttcttcatattatatctgtttctttttatgctgaactcaatgtcttacttattagacatcttttggcattacattcaagtc |
119 |
Q |
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| T |
44145316 |
ttatttcctaatgtcatctttcttcatattatatctgtttctttttatgctgaactcaatgtcttacttattagacatcttttggcattacattcaagtc |
44145217 |
T |
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| Q |
120 |
tgggggcattttctttaagaataagatctttatatattgttataaacatgttttatgattaggaagtaacaagatttttaatgtaagaattataatcttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44145216 |
tgggggcattttctttaagaataagatctttatagattgttataaacatgttttatgattaggaagtaacaagatttttaatgtatgaattataatcttt |
44145117 |
T |
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| Q |
220 |
g |
220 |
Q |
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| T |
44145116 |
g |
44145116 |
T |
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