View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_49 (Length: 239)
Name: NF12580_low_49
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 47264485 - 47264693
Alignment:
| Q |
18 |
agacttcaggtttacgtacacaagtcatttttattaactcacacaacacttattttctcatatcatatcatgacttcagcaccattattgttcacagtgc |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47264485 |
agacttcaggtttacgtacacaagtcattt--attaactcacacaacacttattttctcatatcatatcatgacttcagcaccattattgttcacagtgc |
47264582 |
T |
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| Q |
118 |
ggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgatcaagaaggcttacgtttcaatat |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47264583 |
ggaggagccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgaccaagaaggcttacgtttcaatat |
47264682 |
T |
|
| Q |
218 |
tcctatgatgt |
228 |
Q |
| |
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||||||||||| |
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| T |
47264683 |
tcctatgatgt |
47264693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 47275115 - 47275256
Alignment:
| Q |
82 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
181 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47275115 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatc |
47275214 |
T |
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| Q |
182 |
tgacatagatgatcaagaaggcttacgtttcaatattcctat |
223 |
Q |
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||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
47275215 |
tgacatagatgatcaagaatgcttgcgtttcaatatgcctat |
47275256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 47301234 - 47301090
Alignment:
| Q |
82 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
181 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| || |
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| T |
47301234 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatc |
47301135 |
T |
|
| Q |
182 |
tgacatagatgatcaagaaggcttacgtttcaatattcctatgat |
226 |
Q |
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||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
47301134 |
tgacatagatgatcaagaaggtttgcgcttcaatattcctatgat |
47301090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 47281862 - 47281994
Alignment:
| Q |
91 |
cttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacataga |
190 |
Q |
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||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47281862 |
cttcatcaccattattgttgacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacataga |
47281961 |
T |
|
| Q |
191 |
tgatcaagaaggcttacgtttcaatattcctat |
223 |
Q |
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|||||||||| | || ||||||||||| ||||| |
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| T |
47281962 |
tgatcaagaatgtttgcgtttcaatatgcctat |
47281994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 47240681 - 47240814
Alignment:
| Q |
82 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
181 |
Q |
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|
|||||||||||||| || | ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47240681 |
atatcatgacttcatcatcgttaatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatc |
47240780 |
T |
|
| Q |
182 |
tgacatagatgatcaagaaggcttacgtttcaat |
215 |
Q |
| |
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||||||||||||||||||||| || || |||||| |
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| T |
47240781 |
tgacatagatgatcaagaaggtttgcgattcaat |
47240814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 47296642 - 47296522
Alignment:
| Q |
82 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
181 |
Q |
| |
|
|||||||||||||| || | ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
47296642 |
atatcatgacttcatcatcgttaatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgtgaagttaaactattatc |
47296543 |
T |
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| Q |
182 |
tgacatagatgatcaagaagg |
202 |
Q |
| |
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||||||||||||||||||||| |
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| T |
47296542 |
tgacatagatgatcaagaagg |
47296522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 47255512 - 47255642
Alignment:
| Q |
91 |
cttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacataga |
190 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||| ||||||||||| | |||||||| || |
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| T |
47255512 |
cttcatcaccattattgttcacagtgcggaggtcccaaccagagttggtacttccagctgcacccactcctcatgaagttaaactcctctctgacattga |
47255611 |
T |
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| Q |
191 |
tgatcaagaaggcttacgtttcaatattcct |
221 |
Q |
| |
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||||||||||||| | ||||||||| ||||| |
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| T |
47255612 |
tgatcaagaaggccttcgtttcaatcttcct |
47255642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 32729216 - 32729355
Alignment:
| Q |
82 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
181 |
Q |
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|
|||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
32729216 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagttgcacccactcctcgcgaagttaaactattatc |
32729315 |
T |
|
| Q |
182 |
tgacatagatgatcaagaaggcttacgtttcaatattcct |
221 |
Q |
| |
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||| ||||||||||||||||| || ||||||||| ||||| |
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| T |
32729316 |
tgatatagatgatcaagaaggtttgcgtttcaatgttcct |
32729355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 20511577 - 20511668
Alignment:
| Q |
106 |
tgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgatcaa |
197 |
Q |
| |
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||||||| ||||| ||| |||||||| | |||| || |||||||||||||||||||| ||| ||||| || | |||||||||||||||||| |
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| T |
20511577 |
tgttcactgtgcgaaggtgccaaccacagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaa |
20511668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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