View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_5 (Length: 586)
Name: NF12580_low_5
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 584
Target Start/End: Original strand, 46098036 - 46098603
Alignment:
| Q |
17 |
cccttccccttacttcaattgtcttggcatcgaaccacttaccttcaaccacttttcacaactacgacatcgaccctttagccaattcaagtgctaagca |
116 |
Q |
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| T |
46098036 |
cccttccccttacttcaattgtcttggcatggaaccacttaccttcaaccacttttcacaactacgacatcgaccctttagccaattcaagtgctaagca |
46098135 |
T |
|
| Q |
117 |
cttggtttcatctgatcctgacttgtcaaaccgtatggtttttcacaccaatgatatattggatgtgtcaaatgatttgaaagactatgagattgtttac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
46098136 |
cttggtttcatctgatcctgacttgtcaaaccgtatggtttttcacaccaatgatatattggacgtgtcaaatgatttgaaagactatgaaattgtttac |
46098235 |
T |
|
| Q |
217 |
ttagctgccctggtcggtatggacaaggaggnnnnnnntcgaatcattgatcacttggggaagcacatggccccaggagcacttcttatgttaaggagtg |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46098236 |
ttagctgccctggtcggtatggacaaggaggaaaaaaatcgaatcattgatcacttggggaagcacatggccccaggagcacttcttatgttaaggagtg |
46098335 |
T |
|
| Q |
317 |
ctcacggggctcgtgcttttctctatccagtggttgaagcttctgatcttcgaggctttgaggtcctctctgtattccatcctgcagacgaggttatcaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46098336 |
ctcacggggctcgtgcttttctctatccagtggttgaagcttctgatcttcgaggctttgaggtcctctctgtattccatcctgcagacgaggttatcaa |
46098435 |
T |
|
| Q |
417 |
ttcaattgtcatatcgcgtaagtatcctatgcctaaacactcacatgatcatagcctttgttcaatgatcctaccaaacaagtgttctgagattcaagtc |
516 |
Q |
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| T |
46098436 |
ttcaattgtcatatcgcgtaagtatcctatgcctaaacactcacatgatcatagcctttgttcaatgatcctaccaaacaagtgttctgagattcaagtc |
46098535 |
T |
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| Q |
517 |
ttcaatccccttaggggactcaaccatgggaatatgattgaggaattgaccattgatgtccatctcat |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
46098536 |
ttcaatccccttaggggactcaaccatgggaatatgattgaggaattgaccattgatgaccaactcat |
46098603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 69 - 447
Target Start/End: Original strand, 37484852 - 37485230
Alignment:
| Q |
69 |
ttttcacaactacgacatcgaccctttagccaattcaagtgctaagcacttggtttcatctgatcctgacttgtcaaaccgtatggtttttcacaccaat |
168 |
Q |
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|||||||||||| ||| | ||||||||||||||||| | ||| ||||||||| ||||||||||| || ||||| |||||| ||||| |||||||| |
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| T |
37484852 |
ttttcacaactatgactttgaccctttagccaattccaaagcttcttgcttggtttcctctgatcctgaattatcaaagcgtatgtttttttacaccaat |
37484951 |
T |
|
| Q |
169 |
gatatattggatgtgtcaaatgatttgaaagactatgagattgtttacttagctgccctggtcggtatggacaaggaggnnnnnnntcgaatcattgatc |
268 |
Q |
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|||||||||||||| ||||||| ||||||||| ||||| ||||||| || || || || || || ||| |||| | | |||||||| | |
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| T |
37484952 |
gatatattggatgtttcaaatgctttgaaagaatatgaagttgtttatttggcagcacttgtgggaatgagtgttgaggaaaagaataggatcattgagc |
37485051 |
T |
|
| Q |
269 |
acttggggaagcacatggccccaggagcacttcttatgttaaggagtgctcacggggctcgtgcttttctctatccagtggttgaagcttctgatcttcg |
368 |
Q |
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| |||| ||| ||||||| ||||||||||| || ||| | |||||||||||||| || ||||||||| | ||||| || ||||| | ||||||||| |
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| T |
37485052 |
atttggctaagtacatggcaccaggagcactcctgatgctcaggagtgctcacggtgcgcgtgcttttttgtatccggttgttgataccaatgatcttcg |
37485151 |
T |
|
| Q |
369 |
aggctttgaggtcctctctgtattccatcctgcagacgaggttatcaattcaattgtcatatcgcgtaagtatcctatg |
447 |
Q |
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|||||||||||| ||||| || || ||||| | |||||||||||||||||| |||||||| |||| | |||||||||| |
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| T |
37485152 |
aggctttgaggtgctctcggtgtttcatccaacggacgaggttatcaattcagttgtcatagcgcgcaggtatcctatg |
37485230 |
T |
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