View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_50 (Length: 230)
Name: NF12580_low_50
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 17492364 - 17492163
Alignment:
| Q |
20 |
tcctcaacgacaacggcacaatcggcaagatttcttctagttctataactcttataaactttctgaaccttagttgctgcagcatcaagctcaaaaacag |
119 |
Q |
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| T |
17492364 |
tcctcaacaacaacggcacaatcagcaagatttcttctagttctataactcttataaactttctgaaccttagttgctgcagcatcaagctcaaaaacag |
17492265 |
T |
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| Q |
120 |
gttttggagaagagaaaacaacttctttaggcaaagaaagcaaaggcactgccttatgtttcaagttttcatcaacatttgtgtcaaagttcacaggttc |
219 |
Q |
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| T |
17492264 |
gttttggagaagagaaaacaacttctttaggcaaagaaagcaaaggcactgccttatgtttcaagttttcatcaacatttgtgtcaaggttcacatgttc |
17492165 |
T |
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| Q |
220 |
tg |
221 |
Q |
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|| |
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| T |
17492164 |
tg |
17492163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 52369120 - 52369268
Alignment:
| Q |
35 |
gcacaatcggcaagatttcttctagttctataactcttataaactttctgaaccttagttgctgcagcatcaagctcaaaaacaggttttggagaagaga |
134 |
Q |
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|||||||||||||| ||||||||||| | |||||||| |||||||| |||| ||||||| |||||||| |||||| |||| || |||||||||| | |
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| T |
52369120 |
gcacaatcggcaaggtttcttctagtacggtaactcttgtaaactttttgaagagtagttgcagcagcatcgagctcagaaactggccttggagaagaaa |
52369219 |
T |
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| Q |
135 |
aaacaacttctttaggcaaagaaagcaaaggcactgccttatgtttcaa |
183 |
Q |
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| T |
52369220 |
aaacaagtgcttcaggcagagaaatcaatggaacttgtttatgtttcaa |
52369268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 6006253 - 6006308
Alignment:
| Q |
29 |
acaacggcacaatcggcaagatttcttctagttctataactcttataaactttctg |
84 |
Q |
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||||| |||||||| || | |||||||||||| ||||||||||| ||||||||||| |
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| T |
6006253 |
acaactgcacaatctgccaaatttcttctagtcctataactcttgtaaactttctg |
6006308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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