View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12580_low_57 (Length: 211)

Name: NF12580_low_57
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12580_low_57
NF12580_low_57
[»] chr1 (15 HSPs)
chr1 (5-194)||(19279305-19279494)
chr1 (5-193)||(13271453-13271641)
chr1 (5-173)||(13081002-13081170)
chr1 (21-173)||(30368261-30368413)
chr1 (6-191)||(12964013-12964198)
chr1 (5-172)||(13085995-13086162)
chr1 (23-173)||(13070331-13070481)
chr1 (30-173)||(13244683-13244826)
chr1 (30-173)||(13094286-13094429)
chr1 (21-173)||(13100888-13101039)
chr1 (23-194)||(13204325-13204496)
chr1 (21-173)||(13007087-13007239)
chr1 (5-149)||(13065350-13065494)
chr1 (30-202)||(13129686-13129858)
chr1 (30-178)||(13161403-13161551)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 19279305 - 19279494
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19279305 gagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 19279404  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttct 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19279405 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcacattgttactccaaaggtttct 19279494  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 13271641 - 13271453
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| || ||||||||||      
T  13271641 gagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagc 13271542  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttc 193  Q
    ||  ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||   ||||||||| | ||||||    
T  13271541 tttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgttactcctagggtttc 13271453  T

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Target: chr1; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 13081002 - 13081170
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||| ||||||||||||||||||| || || || || |||||||||||||||||||||||||| ||||||||||| || |||||||||| |    
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagt 13081101  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    || |||||||||||||||||||||||||| || ||||  ||||||||||| ||||| ||||||||||||    
T  13081102 tttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcac 13081170  T

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Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 30368261 - 30368413
Alignment:
Q  21 agaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaa 120  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||| |||| || ||||| ||| | || |||||| ||| |||| |||||||||| |    
T  30368261 agaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaaga 30368360  T
Q  121 tggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  30368361 tggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 30368413  T

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Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 12964013 - 12964198
Alignment:
Q  6 agatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactt 105  Q
    ||||||| ||||||||||||| |||||||||| || ||||| || ||||||||||| || ||||||||||| ||||| ||| | || ||||||||||  |    
T  12964013 agatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagct 12964112  T
Q  106 tccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtt 191  Q
    |  ||||||||||||||||||| |||  ||| || ||||||||||||||| | || |||||||||||| |||||||||||| ||||    
T  12964113 ttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcactttgttactccaagggtt 12964198  T

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Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 13086162 - 13085995
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||| ||| |||||| ||| | ||||||||||| | |||||||||||| ||||||||||||||  |||| ||||| || ||||||||||      
T  13086162 gagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagc 13086063  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtca 172  Q
     |  |||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||    
T  13086062 attgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtca 13085995  T

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Target: chr1; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 13070331 - 13070481
Alignment:
Q  23 aggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatg 122  Q
    |||||| ||||||||||| ||||| |||||||||||||| || ||| ||||||||||||| ||| | || |||||| ||| |||| |||||||||| |||    
T  13070331 aggacacattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatg 13070430  T
Q  123 gttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    || ||||||||| | |||  |||||||||||||||||| ||||||||||||    
T  13070431 gtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac 13070481  T

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Target: chr1; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 13244683 - 13244826
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    |||||| ||||||| || |||||||||||||| || ||||||||||| ||||| ||| | || |||||| |||  ||| |||||||||||||||||||||    
T  13244683 attataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 13244782  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    || || | ||||||||||||| ||||||||| ||||||||||||    
T  13244783 cttctttgttatggaagtttcgcatacaggtggtggaaggtcac 13244826  T

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Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 13094429 - 13094286
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    ||||||||||||||||| |||||||||||||| || ||  |||| || ||||  ||| | || |||||||||| |||| |||||||||| ||||| ||||    
T  13094429 attatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcag 13094330  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    ||||| | ||| ||||||||||||||||||| ||||||||||||    
T  13094329 ctgctttgttacggaagtttcacatacaggtggtggaaggtcac 13094286  T

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Target: chr1; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 13101039 - 13100888
Alignment:
Q  21 agaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaa 120  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||| |||| || ||||| ||| | || || |||||||  ||| |||||||||| |    
T  13101039 agaggacacattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaaga 13100941  T
Q  121 tggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    |||| ||||||||| | |||  |||||||||||||||||| ||||||||||||    
T  13100940 tggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcac 13100888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 13204496 - 13204325
Alignment:
Q  23 aggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatg 122  Q
    |||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| ||||| ||| | || |||||| ||| |||| |||||||||| |||    
T  13204496 aggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatg 13204397  T
Q  123 gttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttct 194  Q
    || ||||||||| | |||  ||| ||||||||| || | ||||||||||||  ||| || |||||| |||||    
T  13204396 gtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttct 13204325  T

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Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 13007239 - 13007087
Alignment:
Q  21 agaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaa 120  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| ||||| ||| | || || |||||||  ||| |||||||||| |    
T  13007239 agaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaaga 13007140  T
Q  121 tggttgcagctgctgtattatggaagtttcacatacaggtcgtggaaggtcac 173  Q
    |||| ||||| ||| | |||   |||||||||||| |||| |||| |||||||    
T  13007139 tggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcac 13007087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 13065350 - 13065494
Alignment:
Q  5 gagatggacatcaaatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 104  Q
    |||||||| |||||| || |||||||||||||||||||| || |||||||||||||| || |||||||| || ||||| ||| | || |||||||| ||     
T  13065350 gagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcacc 13065449  T
Q  105 ttccttcaaatgaaaatggttgcagctgctgtattatggaagttt 149  Q
    ||| || ||||||| |||| ||| || ||| || |||||||||||    
T  13065450 ttcgttgaaatgaagatggctgccgcggctatactatggaagttt 13065494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 13129858 - 13129686
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    ||||||||||||||||| ||||||||| |||| || ||  |||| || ||||  ||| | || |||||| ||| |||| |||||||||| ||||| ||||    
T  13129858 attatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcag 13129759  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgttactccaaaggtttctctgcttct 202  Q
    ||||| | |||  |||||||||||||||||| ||||||||||||  ||| || |||| | ||||| |||||||    
T  13129758 ctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgcttct 13129686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 13161551 - 13161403
Alignment:
Q  30 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 129  Q
    |||||||||||||| || |||||||||||| | || ||  |||| || ||||  ||| | || |||||| ||| |||| |||||||||| ||||| ||||    
T  13161551 attatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcag 13161452  T
Q  130 ctgctgtattatggaagtttcacatacaggtcgtggaaggtcacattgt 178  Q
    ||||| | ||| ||||||||||||||||||| |||||||||||| ||||    
T  13161451 ctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgt 13161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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