View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12580_low_8 (Length: 445)
Name: NF12580_low_8
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 136 - 430
Target Start/End: Complemental strand, 37319845 - 37319551
Alignment:
| Q |
136 |
cactgtctagaacacactagtccaagtgagcaacaaggtgtgttttagaaaaattattctgagttttacttcaggatttcttttactttatttcttttct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37319845 |
cactgtctagaacacactagtccaagtgagcaactaggtttgttttagaaaatttattctgagttttacttcaggatttcttttactttatttcttttct |
37319746 |
T |
|
| Q |
236 |
aagatttcaatatcctatttaaatatgtccataacaaattttacttgtaactgtattcatattattgatcaatcaggatagctatttttagaatttcata |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
37319745 |
aagatttcaatatcctatttaaatatgtccataacaaattttacttgtaaccgtattcatattattgatcaatcagcattgctatttttagaatttcata |
37319646 |
T |
|
| Q |
336 |
gatttctgtaatgaagtaatatattttaattttctacaacaaatctatcatttgtctcttattttgtcaaataatgaaataattgcacacaggtt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37319645 |
gatttctgtaatgaagtaatatattttaattttctacaacaaatctatcatttgtctcttattttgtcaaataatgaaataattgcacacaggtt |
37319551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 37320098 - 37319983
Alignment:
| Q |
21 |
gttaatgtcatagactttgtggttggtaaaggaaagggaaaggagacactgacttgataaaggtaatatgtgtggatagcattaaacaaaaaagaaaggg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37320098 |
gttaatgtcatagactttgtggttggtaaaggaaagggaaaggagacactgacttgataaaggtaatatgtgtggatagcattaaacaaaaaagaaaggg |
37319999 |
T |
|
| Q |
121 |
aatcattttttgtttc |
136 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37319998 |
aatcattttttgtttc |
37319983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University