View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12580_low_9 (Length: 435)
Name: NF12580_low_9
Description: NF12580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12580_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 35197318 - 35197735
Alignment:
| Q |
17 |
aagtatatataacataacaacaataatacagtagaaaagtccctcacaaacattctaaaaggccccacaggattgaatatacttgaaacttccataaact |
116 |
Q |
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| T |
35197318 |
aagtatatataacataacaacaataatacagtagaaaagtccctcacaaacattctaaaaggccccacaggattgaatatacttgaaacttccataaact |
35197417 |
T |
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| Q |
117 |
agagtccaaagccataagtggtagattctgttgttaaaagaccgtgtatgaccagtttccttactggatttttctatagctttgcttcttatggtctact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35197418 |
agagtccaaagccataagtggtagattctgttgttaaaagaccgtgtatgaccagtttccttactggatttttctatagctttgcttcttatggtctact |
35197517 |
T |
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| Q |
217 |
ttccaaggtgtgactcttttactattgcttgctacttacttttcactatgatcgagtggtcaattattatgttaacaccaagatcaggtgcataaatata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35197518 |
ttccaaggtgtgactcttttactattgcttgctacttacttttcactatgatcgagtggtcaattattatgttaacaccaagatcaggtgcataaatata |
35197617 |
T |
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| Q |
317 |
gcaaaataaacaataatccatt----tctaaaattgggaaaatgaattcatgcaattgggatattcaatattcactcaataagtacatcgatgaccgtca |
412 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35197618 |
gcaaaataaacaataatccatttctatctaaaattgggaatatgaattcatgcaattgggatattcaacattcactcaataagtacatcgatgaccgtca |
35197717 |
T |
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| Q |
413 |
gatcaagatctaattgct |
430 |
Q |
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||| |||||||||||||| |
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| T |
35197718 |
gattaagatctaattgct |
35197735 |
T |
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