View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12581_high_9 (Length: 279)
Name: NF12581_high_9
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 5549516 - 5549264
Alignment:
| Q |
15 |
cttgtctctgttgatggtcaaatcatccatatttcttggtaattttctgaaccttaaaaacaactgtttnnnnnnnnnnnnnntccaatgatctcattct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5549516 |
cttgtctctgttgatggtcaaatcatccatatttcttggtaattttctgaaccttaaaaacaactgtttaaaaagaaaaaaaatccaatgatctcattct |
5549417 |
T |
|
| Q |
115 |
tcagtcatcatgtcaaaatctgattggatgtgatataaaataaagtactaaaataatatatctaattttggaataactacaaaattattaaatattaaga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
5549416 |
tcagtcatcatgtcaaaatctgattggatgtgatataaaataaagtactaaaataatatatctaattttggaatatctacaaaattataaaatattaaga |
5549317 |
T |
|
| Q |
215 |
aacccttttattaatttctacaaatgatgttcttttctgataccttgatgtcc |
267 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
5549316 |
aacccttttattaatttctacacatgatgttcttttctgataccttaatgtcc |
5549264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University