View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_1 (Length: 653)
Name: NF12581_low_1
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Original strand, 34556111 - 34556752
Alignment:
| Q |
1 |
gctctgtcaagaacccttaatgtaagttactttagtttgtgatggccgtcattggatagtatgccacggtctaatatcatataatgcaccatatgataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556111 |
gctctgtcaagaacccttaatgtaagttactttagtttgtgatggccgttattggatagtatgccacggtctaatatcatataatgcaccatatgataat |
34556210 |
T |
|
| Q |
101 |
cattagtttaacagttatctctcatgtgctttattttgtctcggtacaacatgcaatttagatgcaactcagataaataaataaaagacagaagattgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34556211 |
cattagtttaacagttatctctcatgtgctttattttgtcccggtaaaacatgcaatttagatgcaactcagaaaaataaataaaagacagaagattgct |
34556310 |
T |
|
| Q |
201 |
aactaa-acaggactggattctggctaataatttcttcagtgcttcttgtagtgaattgtaatctggaatagatatgtgctgtcagttactttgtctata |
299 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
34556311 |
aactaacaaaggactggattctggctaataatttcttcagtgcttctagaagtgaattgtaggctggaatagagatgtgctgtcagttactttgtctata |
34556410 |
T |
|
| Q |
300 |
attacttatgcgtgttgtttgccttattacgcttaggtttctaatctggacagtgtgtctctgttccttgattaattgctaccagtggttttagttttcc |
399 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556411 |
attacttatgcgtgttgtttgccttattacgcttaagtttctaatctggacagcgtgtctctgttccttgattaattgctaccagtggttttagttttcc |
34556510 |
T |
|
| Q |
400 |
tttttcgccagcagattgctttcatttgtactttaaattagttttcagaaatttaggattcagataaatatgcagcggcttgttttcctttgcagtttag |
499 |
Q |
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| T |
34556511 |
ttttttgccagcagattgctttcatttgtactttaaattagttttcagaaatttaggattcagataaatatgcagcggcttgttttcctttgcagtttag |
34556610 |
T |
|
| Q |
500 |
ggaacatgttgattatgtatcatattggccagctgagctttatacagctgtaccaagtcggtctttctttccaagaggatttctatgggatgaaggtttt |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556611 |
ggaacatgttgattatgtatcatattggccagctgagctttatacagctgtaccaagtcggtctttctttccaagaggatttctatgggatgaaggtttt |
34556710 |
T |
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| Q |
600 |
catcaacttctaatctggtcagtttcctagctaatgatgtcc |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556711 |
catcaacttctaatctggtcagtttcctagctaatgatgtcc |
34556752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 479 - 626
Target Start/End: Original strand, 34527866 - 34528013
Alignment:
| Q |
479 |
ttgttttcctttgcagtttagggaacatgttgattatgtatcatattggccagctgagctttatacagctgtaccaagtcggtctttctttccaagagga |
578 |
Q |
| |
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|||||||| ||||||| ||| ||||||| || |||| ||||||||||||| ||||||||||| |||||||||||| |||| || ||||||||||||| |
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| T |
34527866 |
ttgttttcgtttgcagcatagtgaacatgctgcttatatatcatattggcctgctgagctttacacagctgtaccatgtcgatcaacctttccaagagga |
34527965 |
T |
|
| Q |
579 |
tttctatgggatgaaggttttcatcaacttctaatctggtcagtttcc |
626 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34527966 |
tttttatgggatgaaggttttcatcaacttgtaatctggtcagtttcc |
34528013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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