View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_10 (Length: 324)
Name: NF12581_low_10
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_10 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 41962658 - 41962981
Alignment:
| Q |
1 |
aaattcaaatcccacttcctttggtgatggcattgctttcttcctttcccccaacattctctcatcaacattgtcaccaagcccatttggtcttcctaca |
100 |
Q |
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| T |
41962658 |
aaattcaaatcccacttcctttggtgatggcattgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctaca |
41962757 |
T |
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| Q |
101 |
aattttattgctgttgaattcgatacgcgattcaacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaactctctta |
200 |
Q |
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| T |
41962758 |
aattttattgctgttgaattcgatacgcgattcaacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaactctctta |
41962857 |
T |
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| Q |
201 |
aaattgttgatccaattttcaatgggattgatctcaagagtggtaacactatcacttcttggattgattacaagactgatcagaatttgctttctgtttt |
300 |
Q |
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| T |
41962858 |
aaattgttgatccaattttcaatgggattgatctcaagagtggtaacactatcacttcttggattgattacaagactgatcagaatttgctttctgtttt |
41962957 |
T |
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| Q |
301 |
cttgagttattctactaagaagcc |
324 |
Q |
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| T |
41962958 |
cttgagttattctactaagaagcc |
41962981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 1224132 - 1224455
Alignment:
| Q |
1 |
aaattcaaatcccacttcctttggtgatggcattgctttcttcctttcccccaacattctctcatcaacattgtcaccaagcccatttggtcttcctaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1224132 |
aaattcaaatcccacttcctttggtgatggcattgttttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctaca |
1224231 |
T |
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| Q |
101 |
aattttattgctgttgaattcgatacgcgattcaacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaactctctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224232 |
aattttattgctgttgaattcgatacgcgattcaacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaactctctta |
1224331 |
T |
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| Q |
201 |
aaattgttgatccaattttcaatgggattgatctcaagagtggtaacactatcacttcttggattgattacaagactgatcagaatttgctttctgtttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224332 |
aaattgttgatccaattttcaatgggattgatcttaagagtggtaacactatcacttcttggattgattacaagactgatcagaatttgctttctgtttt |
1224431 |
T |
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| Q |
301 |
cttgagttattctactaagaagcc |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
1224432 |
cttgagttattctactaagaagcc |
1224455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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