View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_11 (Length: 314)
Name: NF12581_low_11
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 5525819 - 5525666
Alignment:
| Q |
140 |
aaaggttaacctagtcactaataataaagtcttgtaaccaaatttggaggtcgagttacagctcccatgaagagaaccacatttggatgcctcaatcttt |
239 |
Q |
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| T |
5525819 |
aaaggttaaccta-tcacaaataataaagtcttgtaaccaaatttggaggtcgaattacagctcccatgaagagaaccacatttggatgcctcaatcttt |
5525721 |
T |
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| Q |
240 |
tcattactgtgacctatttgcaattaaataccgtaagttttctggtatatataaa |
294 |
Q |
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| T |
5525720 |
tcattattctgacctatttgtaattaaataacgtaagttttctggtatatataaa |
5525666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 5525996 - 5525869
Alignment:
| Q |
15 |
atacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaagacactatcaccgtaacaaatgtgaaacatttttcattaaaaatcataa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||| |
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| T |
5525996 |
atacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaagactctatcaccataacaaatgtgaaacattgttcattaaaaagcataa |
5525897 |
T |
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| Q |
115 |
caacaagcaaaagagaactccgtacaaa |
142 |
Q |
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| T |
5525896 |
caacaagcaaaagagaactccgtacaaa |
5525869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 30005645 - 30005528
Alignment:
| Q |
181 |
atttggaggtcgagttacagctcccatgaagagaaccacatttggatgcctcaatcttttcattactgtgacctatttgcaattaaataccgtaagtttt |
280 |
Q |
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| T |
30005645 |
atttggaggtcgaattacagctcccatgaagagaaccacatttggatgcctcaatcttttcattattctgacctatttgcaattaaataccgtaagtttt |
30005546 |
T |
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| Q |
281 |
ctggtatatataaataat |
298 |
Q |
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|||||||||||||||||| |
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| T |
30005545 |
ctggtatatataaataat |
30005528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 48223758 - 48223632
Alignment:
| Q |
16 |
tacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaagacactatcaccgtaacaaatgtgaaacatttttcattaaaaatcataac |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
48223758 |
tacttcttgtaaaccaaatggaacctccttagcatacctgaaacttgaaagacattatcaccaaaacaaatgtgaaacatttttcattaaaaaacagaac |
48223659 |
T |
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| Q |
116 |
aacaagcaaaagagaactccgtacaaa |
142 |
Q |
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|||||||||| ||||||| ||||||| |
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| T |
48223658 |
aacaagcaaaggagaactatgtacaaa |
48223632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 23657017 - 23657132
Alignment:
| Q |
23 |
tgtgaaccaaatggaacctccttagcat-acctgaaacttgaaagacactatcaccgtaacaaatgtgaaa--catttttcattaaaaatcataacaaca |
119 |
Q |
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|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||| ||||||| || |
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| T |
23657017 |
tgtgaaccaaatagaatctccttagcatcacctgaaacttgaaagacactatcatcataacaaatgtgaaacccctcgttcattaaaaagcataacatca |
23657116 |
T |
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| Q |
120 |
agcaaaagagaactcc |
135 |
Q |
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|| || ||| |||||| |
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| T |
23657117 |
aggaagagataactcc |
23657132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 45203488 - 45203424
Alignment:
| Q |
181 |
atttggaggtcgagttacagctcccatgaagagaaccacatttggatgcctcaatcttttcatta |
245 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
45203488 |
atttggaggtctagttatagctcccatgaagagaacaacatttggatgcctcagtcttctcatta |
45203424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 43262165 - 43262207
Alignment:
| Q |
140 |
aaaggttaacctagtcactaataataaagtcttgtaaccaaat |
182 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
43262165 |
aaagattaacctagtctctaataataaagtcttgtaaccaaat |
43262207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 36229243 - 36229201
Alignment:
| Q |
140 |
aaaggttaacctagtcactaataataaagtcttgtaaccaaat |
182 |
Q |
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|||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
36229243 |
aaaggttaacctagtctctaataataaagtcatgtaacgaaat |
36229201 |
T |
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