View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12581_low_12 (Length: 294)

Name: NF12581_low_12
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12581_low_12
NF12581_low_12
[»] chr6 (8 HSPs)
chr6 (33-284)||(11662370-11662621)
chr6 (33-272)||(11674448-11674687)
chr6 (33-255)||(11710972-11711194)
chr6 (33-272)||(11617566-11617805)
chr6 (33-255)||(11632427-11632649)
chr6 (33-255)||(12094490-12094712)
chr6 (33-255)||(11755223-11755445)
chr6 (41-250)||(11740270-11740479)
[»] scaffold0019 (1 HSPs)
scaffold0019 (33-272)||(9376-9615)
[»] scaffold0196 (1 HSPs)
scaffold0196 (33-257)||(11933-12157)
[»] chr1 (1 HSPs)
chr1 (53-219)||(44811020-44811186)
[»] chr7 (1 HSPs)
chr7 (1-34)||(33789492-33789525)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 33 - 284
Target Start/End: Complemental strand, 11662621 - 11662370
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662621 accattgtctctgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 11662522  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662521 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 11662422  T
Q  233 actattgtccataaaaccgatgaatctgatgatggttcattttgcctatgct 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662421 actattgtccataaaaccgatgaatctgatgatggttcattttgcctatgct 11662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 11674448 - 11674687
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    ||||||||| ||| |||| |||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||  ||||||| ||| || |||| |||    
T  11674448 accattgtcgttgcgataaggattctaggatctttataaagaaaagtgatattgccaatacataaccttcatattcaaaacttttattgccttcagcaac 11674547  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    |||||||||  |||| ||||||||||| ||| |||||| ||  |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||  |    
T  11674548 caatataaactcattcagaagtaaaggaccagaagatagagtgagtaccttgagcaaagcaaagaatccggttatcaaaatctctctttggtggcacgca 11674647  T
Q  233 actattgtccataaaaccgatgaatctgatgatggttcat 272  Q
    | ||||||||||||||| || |||| ||||||||||||||    
T  11674648 attattgtccataaaacggacgaatgtgatgatggttcat 11674687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 11710972 - 11711194
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||  |||||  ||| ||||||||||||||||||||||| || ||||||||    
T  11710972 accattgtctttgtgataaggactctatgatctttatgaagaaaagtaatataaccaatgcatagccttcatatttgaaactttcattaccttcagaaac 11711071  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
     |||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||| | ||| ||||| |  ||||||  |    
T  11711072 taatataaacgcattcagaagtagagggccacaagatattgcaagtaccttgagcaaagcgaagaatcccgttatcagaatatctctcctatggcacaaa 11711171  T
Q  233 actattgtccataaaaccgatga 255  Q
    | |||||||||||| ||||||||    
T  11711172 attattgtccataataccgatga 11711194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 33 - 272
Target Start/End: Complemental strand, 11617805 - 11617566
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    ||||||||||||| ||||| ||||||||||||||||  | ||| | ||||||||| |||| ||||||||||||||||||||||||||| || |||| |||    
T  11617805 accattgtctttgagatatagattctatgatctttacaaggaagattgatatggctaataaataaccttcatatttgaaactttcattaccttcagcaac 11617706  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    |||||||||  |||| ||||  | ||| ||| ||||||  |  ||||||||||| ||||| |||||||||||||| |||||||||||   |||||||  |    
T  11617705 caatataaattcattcagaatcataggaccagaagatagtgtgagtaccttgagaaaagcgaagaatcctgttatcaaaatctctctcttgtggcacaaa 11617606  T
Q  233 actattgtccataaaaccgatgaatctgatgatggttcat 272  Q
    | ||||||||||||||||||  ||| ||||||||||||||    
T  11617605 attattgtccataaaaccgacaaatgtgatgatggttcat 11617566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 11632427 - 11632649
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    |||||||||||||||||| |||||||||||| ||||| |  || ||||| | |||||||| |||||||||||||||||||||||| || ||||| | |||    
T  11632427 accattgtctttgtgatagggattctatgatttttataacaaagagtgaaacggccaatacataaccttcatatttgaaactttcgttaccctcggcaac 11632526  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    |||||| || ||||||||||||| |||   | |||||| ||| |||||||| | ||| ||||||||||| ||||  ||||||||||| |  ||||||  |    
T  11632527 caatatgaaggcattaagaagtagaggagtagaagatagagcgagtaccttaaacaacgcaaagaatccggttaccaaaatctctctccaatggcacaaa 11632626  T
Q  233 actattgtccataaaaccgatga 255  Q
    |  || |||||||||||||||||    
T  11632627 aagatggtccataaaaccgatga 11632649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 12094490 - 12094712
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    ||||||| ||||| |||| ||| ||||  ||||| || || |||||||| |||||||| | |||||||||| |||||||||||| ||| |||||||  ||    
T  12094490 accattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaaataaccttcaaatttgaaactttgattaccctcagccac 12094589  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    || |||||| ||||| | || || ||| | | |||| | ||  ||||||||||| || ||||| ||||| | ||| ||||||||||| |||||||||  |    
T  12094590 cagtataaaggcattcaaaattataggacaagaagaaagagtgagtaccttgagaaatgcaaaaaatccagatatcaaaatctctctccggtggcacaaa 12094689  T
Q  233 actattgtccataaaaccgatga 255  Q
    || ||||||||||| ||||||||    
T  12094690 acgattgtccataacaccgatga 12094712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 11755445 - 11755223
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    ||||||| ||||| |||| ||| ||||  ||||| || || |||||||| || ||||| |  ||||||||| |||||||||||| ||| |||||||  ||    
T  11755445 accattgcctttgagatagggactctaaaatcttgataaacaaaagtgagattgccaaaaagtaaccttcaaatttgaaactttgattaccctcagccac 11755346  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    || |||||| ||||| |  | || ||| | | |||| | ||  ||||||||||| || ||||||||||| | ||| ||||||||||| ||||||||   |    
T  11755345 cagtataaaggcattcaatattataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatatcaaaatctctctccggtggcaaaaa 11755246  T
Q  233 actattgtccataaaaccgatga 255  Q
    || ||||||||||| ||||||||    
T  11755245 acaattgtccataacaccgatga 11755223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 11740270 - 11740479
Alignment:
Q  41 ctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaaccaatataa 140  Q
    ||||| |||| ||||||||| || ||| | || |||||||| ||||| |||| ||||| |||||||||| ||||||||||  |||| |   |||| ||||    
T  11740270 ctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgccaaaataa 11740369  T
Q  141 aagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccgaactattgt 240  Q
    | ||||| | || || ||| | |||||| |  || ||||||||||| || ||||||||||||| ||| ||||| ||||| || ||||||  || ||||||    
T  11740370 aggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattattgt 11740469  T
Q  241 ccataaaacc 250  Q
    || |||||||    
T  11740470 ccgtaaaacc 11740479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 9376 - 9615
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    |||||||||||||||||| |||| | ||||||||||| ||||| |||||||| || ||||||||||| | ||| |||||||||  ||| || |||| |||    
T  9376 accattgtctttgtgatacggatccaatgatctttataaagaagagtgatatcgctaatatataaccctgataattgaaacttgtattgccttcagcaac 9475  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    | |||||||  |||| |||| || ||| ||| ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||  ||| ||||  |    
T  9476 cgatataaattcattcagaaatagaggaccagaagttagagcaagtaccttgagcaaagcaaagagtcctgttatcaaaatctctctctggtagcacaaa 9575  T
Q  233 actattgtccataaaaccgatgaatctgatgatggttcat 272  Q
    | ||||||||| || ||||| |||| | |||||| |||||    
T  9576 attattgtccaaaagaccgacgaatataatgatgattcat 9615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 12157 - 11933
Alignment:
Q  33 accattgtctttgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaac 132  Q
    |||||||||||||||||| |||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||    
T  12157 accattgtctttgtgatagggattctatgatttttataaagaagagtgacatggctaatatataaccttcatatttgaaactttcattaccctcagcaac 12058  T
Q  133 caatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccga 232  Q
    || |||||| || || ||||||| |||   | |||||| ||| ||||||||||  |||||||| || || ||||  ||||| |||||  |||||||   |    
T  12057 cattataaaggcgttcagaagtagaggagtaaaagatagagcgagtaccttgaaaaaagcaaacaacccggttaccaaaatttctctctggtggcataaa 11958  T
Q  233 actattgtccataaaaccgatgaat 257  Q
    |  |||||||||||||  |||||||    
T  11957 atgattgtccataaaattgatgaat 11933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 44811186 - 44811020
Alignment:
Q  53 gattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaaccaatataaaagcattaagaa 152  Q
    |||||||| || ||||| |||||||||| ||||||||||| | ||||||||||||||||||| |||   || ||    || |||||||| | ||| ||||    
T  44811186 gattctataatttttataaagaaaagtgctatggccaatacaaaaccttcatatttgaaactctcaaaaccttcgacgactaatataaaggaattcagaa 44811087  T
Q  153 gtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctct 219  Q
    | || || ||| |||| |  ||||||||||| ||||| ||||||||||| | ||| ||||| |||||    
T  44811086 gcaatggtccagaagacagtgcaagtaccttaagcaatgcaaagaatccagatatcaaaatttctct 44811020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33789492 - 33789525
Alignment:
Q  1 ctacgcatagcaacaaatccaaaacgaagccaac 34  Q
    |||||||||||||||||||||||| |||||||||    
T  33789492 ctacgcatagcaacaaatccaaaatgaagccaac 33789525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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