View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12581_low_15 (Length: 282)

Name: NF12581_low_15
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12581_low_15
NF12581_low_15
[»] chr4 (2 HSPs)
chr4 (20-282)||(45868267-45868529)
chr4 (20-282)||(45982476-45982738)
[»] chr5 (1 HSPs)
chr5 (82-228)||(40893035-40893171)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 45868529 - 45868267
Alignment:
Q  20 attgaggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggcaattgaaaaccttggggaagagaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  45868529 attgaggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggtaattgaaagccttggggaagagaaaaac 45868430  T
Q  120 agtgataaagacagtatttttcccaaacagcgagcttttgatccaaaacagattgaaccttttgacgaatggaatcaacaccctttcacaaaaacaaaga 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |    
T  45868429 agtgataaagacagtatttttcccaaacagtgagcttttgatccaaaacagattgaaccttttgtcgaatgcaatcaacaccctttcacaaaaacaaaca 45868330  T
Q  220 aataaataaataatcaattttaatcacagtgttcgttagttaccgtaattaaacttaattaaa 282  Q
    |||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||    
T  45868329 aataaataaataatcaattttaatcatagtgttcgttaattactctaattaaacttaattaaa 45868267  T

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Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 45982476 - 45982738
Alignment:
Q  20 attgaggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggcaattgaaaaccttggggaagagaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  45982476 attgaggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggtaattgaaagccttggggaagagaaaaac 45982575  T
Q  120 agtgataaagacagtatttttcccaaacagcgagcttttgatccaaaacagattgaaccttttgacgaatggaatcaacaccctttcacaaaaacaaaga 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |    
T  45982576 agtgataaagacagtatttttcccaaacagtgagcttttgatccaaaacagattgaaccttttgtcgaatgcaatcaacaccctttcacaaaaacaaaca 45982675  T
Q  220 aataaataaataatcaattttaatcacagtgttcgttagttaccgtaattaaacttaattaaa 282  Q
    |||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||    
T  45982676 aataaataaataatcaattttaatcatagtgttcgttaattactctaattaaacttaattaaa 45982738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 40893171 - 40893035
Alignment:
Q  82 agtgtttggcaattgaaaaccttggggaagagaaaaacagtgataaagacagtatttttcccaaacagcgagcttttgatccaaaacagattgaaccttt 181  Q
    |||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||          ||||    
T  40893171 agtgtttggcaaatgaaaacctcgaggaagagaaaaacagtgatgaagagagtattttccccaaacagcgagcttttgatccaaaa----------cttt 40893082  T
Q  182 tgacgaatggaatcaacaccctttcacaaaaacaaagaaataaataa 228  Q
    ||||||||| ||||||||||||||||||||| |||  ||||||||||    
T  40893081 tgacgaatgcaatcaacaccctttcacaaaatcaagtaaataaataa 40893035  T

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